PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00301.1_g00042.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 286aa    MW: 33055.8 Da    PI: 6.8778
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00301.1_g00042.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.35.2e-1893145456
                              -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              + +++ eq+++Le+ Fe  +++  e++ +LAk lgL+ rq+ +WFqNrRa++k
  Rsa1.0_00301.1_g00042.1  93 KKRLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWK 145
                              4568889*********************************************9 PP
2HD-ZIP_I/II128.62.6e-4191182192
              HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                              ekk+rl+ eqv++LE+sFe  +kLeperK++la++Lglqprq+a+WFqnrRAR+ktkqlE+dy++Lk+++d lk++n++L +++++
  Rsa1.0_00301.1_g00042.1  91 EKKKRLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYDSLKKQFDVLKSDNDSLLAHNKK 176
                              69************************************************************************************ PP

              HD-ZIP_I/II  87 Lreelk 92 
                              L++el 
  Rsa1.0_00301.1_g00042.1 177 LHAELV 182
                              **9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.31E-1980149IPR009057Homeodomain-like
SMARTSM003892.6E-1790151IPR001356Homeobox domain
PROSITE profilePS5007116.55291147IPR001356Homeobox domain
CDDcd000862.47E-1692148No hitNo description
PfamPF000462.8E-1593145IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.5E-1995155IPR009057Homeodomain-like
PRINTSPR000311.0E-5118127IPR000047Helix-turn-helix motif
PROSITE patternPS000270122145IPR017970Homeobox, conserved site
PRINTSPR000311.0E-5127143IPR000047Helix-turn-helix motif
PfamPF021835.7E-15147186IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MAFPQHGFMF QQLHEENAHH LPSPTSLPSC PPHLFYGGGD YMMNRSMSFT GVSDHHHLTQ  60
KSPTMTNMND QDQLGEEDNL SDDGSHMMLG EKKKRLNLEQ VRALEKSFEL GNKLEPERKM  120
QLAKALGLQP RQIAIWFQNR RARWKTKQLE RDYDSLKKQF DVLKSDNDSL LAHNKKLHAE  180
LVALKKQDRK EPSKIKRELA EASWSNNEDT ENNNSSDINH VNMIKDLFPS SVRSATTTTT  240
SSHIDHQMVQ DQGFCNMFNG IDETTSASYW AWPDQQQQHQ SHHQFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139147RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00301.1_g00042.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2293640.0AK229364.1 Arabidopsis thaliana mRNA for homeobox protein, complete cds, clone: RAFL16-61-C06.
GenBankBT0440590.0BT044059.1 Arabidopsis thaliana unknown protein (At5g15150) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018458219.10.0PREDICTED: homeobox-leucine zipper protein HAT7
SwissprotQ004660.0HAT7_ARATH; Homeobox-leucine zipper protein HAT7
TrEMBLA0A397XU220.0A0A397XU22_BRACM; Uncharacterized protein
STRINGBra008717.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30952666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.11e-151homeobox 3