PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00288.1_g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 526aa    MW: 58084.8 Da    PI: 6.2024
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00288.1_g00010.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS386.72.7e-1181485191374
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              l+e+L+e A+av++gd++ a  ++  l++++s +g+p+qRl ay++e+L+arl +s+ ++y+al+++e +     e ++++ +++e
  Rsa1.0_00288.1_g00010.1 148 LKEVLMEGARAVADGDFATACGFIDVLEQMVSVSGTPVQRLGAYMAEGLRARLEGSGGNIYRALKCNEPT---GRELMSYMGVLYE 230
                              5789*****************************************************************9...99999999***** PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170
                              ++P+ kf++ + N aIlea++g++++H+iDf+i qG Q++ L+++La+Rp+g+p lR+Tgv++++s   +   l  +ge+Lak+Ae
  Rsa1.0_00288.1_g00010.1 231 ICPYWKFAYTASNAAILEATAGDSKIHVIDFQIAQGSQYMFLIHELAKRPGGAPLLRVTGVDDSQSRyaRGGGLGLVGEKLAKMAE 316
                              ***************************************************************999899999************** PP

                     GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksls.PkvvvvveqeadhnsesFle 255
                              ++gvpfef+  ++ +  +++ e+L v+pg a++Vn+ + lh+++desvs+e++rd++L+l+ksl  P++v++veqe+++n+++Fl 
  Rsa1.0_00288.1_g00010.1 317 SCGVPFEFHD-AVMSGCKVHREHLGVEPGFAVVVNFPYVLHHMPDESVSVENHRDRLLHLIKSLGpPRLVTLVEQESNTNTSPFLS 401
                              **********.788899999********************************************8469****************** PP

                     GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341
                              rf+e+l+yy+a+f+s++a  pr++++ri+ E+++++r+ivn++ace++er+erhe l+kWr r+++aGF   p+s +aa  a+ +l
  Rsa1.0_00288.1_g00010.1 402 RFAETLDYYTAMFESIDAARPRDDRQRISAEQQCVARDIVNMIACEERERVERHEVLGKWRVRMMMAGFVGWPVSRSAAFAASEML 487
                              ************************************************************************************** PP

                     GRAS 342 rkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              + ++++ y++  ++g+l+l Wk+rp+ ++SaW+
  Rsa1.0_00288.1_g00010.1 488 KGYDKN-YKLGGSEGALYLFWKRRPMATCSAWK 519
                              ****66.*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.616122500IPR005202Transcription factor GRAS
PfamPF035149.5E-116148519IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MQTSQKHHTA AGLHMLYPQP HCSPQFQMID NNNNNGSSKE SFFTLESSGP LPSYDSPSVS  60
ITSARTPFSP HSCISDPHPS PENVYGSPLS AASSYVYDEA GIKSKIRELE DSLLSGDPKV  120
EEYSGFSPAA GKSWNWDELL ALTPQLDLKE VLMEGARAVA DGDFATACGF IDVLEQMVSV  180
SGTPVQRLGA YMAEGLRARL EGSGGNIYRA LKCNEPTGRE LMSYMGVLYE ICPYWKFAYT  240
ASNAAILEAT AGDSKIHVID FQIAQGSQYM FLIHELAKRP GGAPLLRVTG VDDSQSRYAR  300
GGGLGLVGEK LAKMAESCGV PFEFHDAVMS GCKVHREHLG VEPGFAVVVN FPYVLHHMPD  360
ESVSVENHRD RLLHLIKSLG PPRLVTLVEQ ESNTNTSPFL SRFAETLDYY TAMFESIDAA  420
RPRDDRQRIS AEQQCVARDI VNMIACEERE RVERHEVLGK WRVRMMMAGF VGWPVSRSAA  480
FAASEMLKGY DKNYKLGGSE GALYLFWKRR PMATCSAWKP NPNQIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-521525198375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00288.1_g00010.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018451178.10.0PREDICTED: scarecrow-like protein 13
RefseqXP_018451179.10.0PREDICTED: scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A3N6R9V40.0A0A3N6R9V4_BRACR; Uncharacterized protein
STRINGBo8g047170.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13