PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00247.1_g00010.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family EIL
Protein Properties Length: 557aa    MW: 63184.2 Da    PI: 6.1156
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00247.1_g00010.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3367.62.2e-112463981353
                              XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                     EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpveg 86 
                              eel+k+ wkd+++lk+lke++k+ l+   +   + + +   + ++++ m +aQDg+LkYM k me c+aqGfvYgi+ e+g++v+g
  Rsa1.0_00247.1_g00010.1  46 EELEKKIWKDKQRLKKLKEMSKNGLGGGAS--LKLSPDGDDDSSSKRMMYQAQDGVLKYMSKAMERCKAQGFVYGIVFENGRTVTG 129
                              8**********************9866655..445678999********************************************* PP

                              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH CS
                     EIN3  87 asdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPW 172
                              +sd+Lr+WWk+kv+fdrngpaai k+ a+ ++l++e +     + + h+l elqDTtlg+LLsalm hc+ppqrr+plekgv+pPW
  Rsa1.0_00247.1_g00010.1 130 SSDNLREWWKDKVRFDRNGPAAILKHSADGNVLGSEVGG----ECTAHKLLELQDTTLGALLSALMPHCKPPQRRYPLEKGVPPPW 211
                              *********************************966665....679**************************************** PP

                              ---S--HHHHHHT--TT--...-----GGG--HHHHHHHHHHHHHHTGGGHHHHH......HTTTTSSSSTTT--SHHHHHHHHHH CS
                     EIN3 173 WPtGkelwwgelglskdqg..tppykkphdlkkawkvsvLtavikhmsptieeir......elerqskylqdkmsakesfallsvl 250
                              WPtG+e+wwg l+l++  +  +ppykkphdlkk+wkv++L  vi+h++ +i++i+      +l+ +s+ lq+km+++e + +l+ l
  Rsa1.0_00247.1_g00010.1 212 WPTGEEDWWGDLSLPEGCRglPPPYKKPHDLKKMWKVGILIGVIRHLASDISNINsynsipKLVGRSRTLQEKMTSREGALWLAAL 297
                              *************************************************998764332333899********************** PP

                              TTTTT-S--XXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......XXXX CS
                     EIN3 251 nqeekecatvsahss...slrkqspkvtlsceqkedvegkkeskikhvqavkttagfpvvrkrkkkpsesakvsskevsrtcqssq 333
                              n+e++++ + + ++    + ++++++  +++ +++dveg+  s+ +h       ++f+ v+  +k++ e ++   +e + tc++s+
  Rsa1.0_00247.1_g00010.1 298 NREKAIVGESQHQPLtflHENSGETDALFHEPEDYDVEGRGGSR-HHRGFG---NNFDSVCNNNKRRFEGESFYPTE-TLTCENSA 378
                              ***99998777774454433447778888899999999999999.444444...47999999999999999999887.59****** PP

                              XXX.XXXXXXXXXXXXXXXX CS
                     EIN3 334 frgsetelifadknsisqne 353
                              +++s++e++f+d+  +++++
  Rsa1.0_00247.1_g00010.1 379 CPYSQPEMGFHDRVLRENHQ 398
                              ******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048737.0E-10846301No hitNo description
Gene3DG3DSA:1.10.3180.107.5E-57169306IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167688.5E-51172303IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene3DG3DSA:2.60.120.103.2E-4436480IPR014710RmlC-like jelly roll fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MYNNTNMGMF PGLLSNTLPR FPEGDVRSAS LNATWKDPTG EEMEIEELEK KIWKDKQRLK  60
KLKEMSKNGL GGGASLKLSP DGDDDSSSKR MMYQAQDGVL KYMSKAMERC KAQGFVYGIV  120
FENGRTVTGS SDNLREWWKD KVRFDRNGPA AILKHSADGN VLGSEVGGEC TAHKLLELQD  180
TTLGALLSAL MPHCKPPQRR YPLEKGVPPP WWPTGEEDWW GDLSLPEGCR GLPPPYKKPH  240
DLKKMWKVGI LIGVIRHLAS DISNINSYNS IPKLVGRSRT LQEKMTSREG ALWLAALNRE  300
KAIVGESQHQ PLTFLHENSG ETDALFHEPE DYDVEGRGGS RHHRGFGNNF DSVCNNNKRR  360
FEGESFYPTE TLTCENSACP YSQPEMGFHD RVLRENHQLI CPYKPTTPLY QPTKEPFGMP  420
SGLVGPYPDY NPSYYGNEPE SLVGMQQQQQ QHQQQQEQHQ QQQQQHQQQE EQHQQQQQVQ  480
NTPDLFNQSD NLYRQNAAER GGNNDYFSGH RFGLVDDSSP STSVINHNLN GHAQTVGMEN  540
NQQNQEEDLS LPWISWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A1e-491713062129Protein ETHYLENE INSENSITIVE 3
4zds_B1e-491713062129Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor acting as a positive regulator in the ethylene response pathway. Could bind the primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00247.1_g00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009120725.10.0PREDICTED: ETHYLENE INSENSITIVE 3-like 2 protein
SwissprotO231150.0EIL2_ARATH; ETHYLENE INSENSITIVE 3-like 2 protein
TrEMBLA0A397XTR10.0A0A397XTR1_BRACM; Uncharacterized protein
STRINGBra002358.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM147191621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21120.11e-171ETHYLENE-INSENSITIVE3-like 2