PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00201.1_g00019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bZIP | ||||||||
Protein Properties | Length: 377aa MW: 40676.1 Da PI: 9.7126 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 73.7 | 2.5e-23 | 259 | 320 | 1 | 62 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L+aeN+aL++el++l+++++kl+ Rsa1.0_00201.1_g00019.1 259 ERELKRERRKQSNRESARRSRLRKQAETEELARKVEALTAENMALRSELNQLSEKSDKLRGA 320 89*******************************************************99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 4.9E-29 | 1 | 97 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 1.4E-13 | 130 | 223 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.5E-19 | 253 | 319 | No hit | No description |
SMART | SM00338 | 1.3E-21 | 259 | 323 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.8E-21 | 259 | 321 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.403 | 261 | 324 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.06E-11 | 262 | 318 | No hit | No description |
CDD | cd14702 | 1.68E-22 | 264 | 315 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 266 | 281 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MGKSEEQPPK VTKSDNIPSS PADQTNVHVY PDWAAMQAYY GPRVAMPPYY NSAMAASGHP 60 PPPPYMWNPQ HMMSPYGTPY ATVYPHGGGV YAHPGFPMGT QPQGQKGVPL TTPGTPLSID 120 TPSKSTGNTE NGLMKKLKEF DGLAMSLGNG TNGDEGKRSR NSSETEGSTD GSDGNTTGAD 180 EPKLKRSREG TPTKDEKKHL VQSSSLRSVS QSSGDNCVKP NVEGGGAIVS AAGVSANSNP 240 TFMSQSLAMV PPETWLQNER ELKRERRKQS NRESARRSRL RKQAETEELA RKVEALTAEN 300 MALRSELNQL SEKSDKLRGA NATLLDKLKS AEPEKRVKNS GNGDNKNKNQ GESESNSTGK 360 LHQLLDTKPR ADGVAAR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 275 | 281 | RRSRLRK |
2 | 275 | 282 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8672884}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00318 | DAP | Transfer from AT2G46270 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00201.1_g00019.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BNU27108 | 0.0 | U27108.1 Brassica napus transcription factor (BnGBF1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018434062.1 | 0.0 | PREDICTED: G-box-binding factor 3-like isoform X1 | ||||
Refseq | XP_018434077.1 | 0.0 | PREDICTED: G-box-binding factor 3-like isoform X1 | ||||
Swissprot | P42776 | 0.0 | GBF3_ARATH; G-box-binding factor 3 | ||||
TrEMBL | A0A397Z7M7 | 0.0 | A0A397Z7M7_BRACM; Uncharacterized protein | ||||
STRING | Bra004550.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3571 | 26 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46270.1 | 0.0 | G-box binding factor 3 |
Publications ? help Back to Top | |||
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