PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00192.1_g00026.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ARR-B
Protein Properties Length: 734aa    MW: 82533.4 Da    PI: 6.7359
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00192.1_g00026.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like70.42.9e-22187240155
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                              kp+++Wt  LH+ F++a++++ G +kA+Pk+ile+m+++ Lt+e+++SHLQkYR+
  Rsa1.0_00192.1_g00026.1 187 KPKIKWTDCLHDLFLQAIRHI-GLDKAVPKKILEFMNLQYLTRENIASHLQKYRI 240
                              79*******************.********************************6 PP
2Response_reg51.36.7e-18109425109
                              EEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHH CS
             Response_reg  25 evaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelv 108
                               v +++d+ eal +lk+++  +Dli++D  mp+m+Gl+l k+i++e   +p+iv+++ ++    +e l  Gak fl Kp+ p ++ 
  Rsa1.0_00192.1_g00026.1  10 TVIAVKDPIEALSTLKTQRydIDLIVTDYYMPHMNGLQLKKQITREFGYIPVIVMSSDSN--IEHESLACGAKCFLPKPIRPTDIP 93 
                              566899999******9998889*********************99999********7776..8899****************9997 PP

                              H CS
             Response_reg 109 k 109
                              +
  Rsa1.0_00192.1_g00026.1  94 Q 94 
                              6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011027.0741100IPR001789Signal transduction response regulator, receiver domain
SMARTSM004480.0064196IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521724.27E-197112IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23009.3E-208107No hitNo description
CDDcd001561.01E-169100No hitNo description
PfamPF000724.6E-141095IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF466891.74E-16185244IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-22186244IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-24187240IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
MILDPLMEIT VIAVKDPIEA LSTLKTQRYD IDLIVTDYYM PHMNGLQLKK QITREFGYIP  60
VIVMSSDSNI EHESLACGAK CFLPKPIRPT DIPQIYQVAL THKRNNKSIL WTEHNHRDTD  120
VSIPQQIQLL TEQASVLKTN KKRFSPRSDS RPVNSSNGGY VSTDSSGKHQ KRKSNDGASD  180
DWRPLKKPKI KWTDCLHDLF LQAIRHIGLD KAVPKKILEF MNLQYLTREN IASHLQKYRI  240
FLRKVAEQSF SCSRMLPTRG IDSIFLQAHL RDQHYNNYTP SSWYETSINN RSFYSKPIQG  300
CGQSRLISNT AEPVRFNQMP YNYMNRSSTY EPRGIGSNLT LPTKSNLSLP IQPSPNDGRR  360
SLFEPTVMAN KTGQTSQVMG FGQHGLSAIN GNSFHNKMMS SYRSLVHNKP GMSSYECLAH  420
NQPGMSSFGS LTPQPGMMNC GNLTPSQPGV SCYVNSTSDQ PDMNNNGSLI LNQLGLNNYG  480
SSTLNQPEIS SYGVSTSNQP RMKNLGSLTP DQHGMSRYRS LTSNQLEMSS HGILYPNQPG  540
LNSYGSIAYT ARVNNHESLT PNQPGPSNFS CGMQFFLNNE NTTYKPQPHD NATTQPNLEI  600
PQLENLSLCD YLDSTDELPC DINNILIDHN KQQEEAVYTN KFKLPANFEN ELDQILSLEE  660
NGDGIFVNIN QGHSGGETSN IVAAPQTNSP IFNMNPNHEQ EQDVPDFVDW SSLDPKDFAN  720
EYDFIDSLLS NDMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-20186246464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00192.1_g00026.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022553939.10.0putative two-component response regulator ARR21
SwissprotQ9LYP50.0ARR21_ARATH; Putative two-component response regulator ARR21
TrEMBLA0A3P5ZUT10.0A0A3P5ZUT1_BRACM; Uncharacterized protein
STRINGBra005928.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61131737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.10.0response regulator 21