PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00159.1_g00036.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | GRAS | ||||||||
Protein Properties | Length: 720aa MW: 82019.5 Da PI: 6.8744 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 348.4 | 1.2e-106 | 344 | 717 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 l++lLl+cA+avs +d+++a+ lL +++++s++gd ++Rla+yf++ L+arla++++++y +l++++ts ++ l+a++ ++ Rsa1.0_00159.1_g00036.1 344 LRSLLLSCAQAVSVNDHRRAEGLLRLVRQHSSSYGDGTERLAHYFANSLEARLAGTGTQVYTSLSSKKTS---AADMLKAYQSYVS 426 689**************************************************************99999...9************ PP GRAS 87 vsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakf 168 v+P+ k++ aN+ I + +++ +++HiiDf+is+G+QW +L + L R++++ +lRiTg++ p+ g ++ + etg+rLak+ Rsa1.0_00159.1_g00036.1 427 VCPFKKIGIAFANHSIQQLAKKTmpHTIHIIDFGISYGFQWHSLVHRLHWRRGSSCKLRITGIDLPQRGfrPANGVIETGHRLAKY 512 **********************9999*****************************************9999*************** PP GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254 +++l+vpfe+n+ +a+++e+++le+L++++gE +aVn ++ +lld++v+++s+rd vL+l+ +++P++++ + ++n++ F+ Rsa1.0_00159.1_g00036.1 513 CKKLNVPFEYNA-IAQKWETIKLEDLKLREGEFVAVNTLFRFRNLLDDTVAVDSPRDVVLRLIHKIRPNIFIPSILSGSYNAPFFV 597 ************.7************************************************************************ PP GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340 +rf e ++++s+lfd+ +++l re+ r++ E+e+ grei+nvvaceg++r+er e++++W +r+ +aG++++p++++ +++ +l+ Rsa1.0_00159.1_g00036.1 598 TRFREVMYHFSSLFDMCDTTLTREDPMRVVFEKEFYGREIMNVVACEGTARVERPESYKQWGSRMVRAGLRQLPVEKELVQKLRLM 683 ************************************************************************************** PP GRAS 341 lrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 + k + s+++ v+++ +++++gWk+r +++ S+W Rsa1.0_00159.1_g00036.1 684 VDKEYkSKEFDVDQDGNWFLQGWKGRLVYASSFW 717 *9998899************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 59.506 | 318 | 697 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.1E-104 | 344 | 717 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 720 aa Download sequence Send to blast |
MGSYYAGFLG SFDNFYQTEF SNLGNGFYVD DQPLLESPSL LPPLHPHPDP YPQQNLAAAD 60 ADDDLTDSVL QYISQVLMEE DMDDKPCMFH DALSLQAAER SLYEALGEKY PDSLPLPTTS 120 PLQLSHSHDE LSDITSSGHT SRTTTTTTTS SDWSFDSLEN NRPSWMQTPT PNNFVFQSTT 180 PSTRSSPNSG SNTVTRSSFS NDLVTNMFKD SNWALQFKRG VEEASKFLPR TTQLVIDENH 240 HHPHYVPYRI TGKKCHWRDE DDEHLPEERS KKQSAVYADD PELADMFEKI LLFGDPKENP 300 KCILNETSQK EPPTKAPQSP KGDITTAYSR GIKPSAYVKE IPDLRSLLLS CAQAVSVNDH 360 RRAEGLLRLV RQHSSSYGDG TERLAHYFAN SLEARLAGTG TQVYTSLSSK KTSAADMLKA 420 YQSYVSVCPF KKIGIAFANH SIQQLAKKTM PHTIHIIDFG ISYGFQWHSL VHRLHWRRGS 480 SCKLRITGID LPQRGFRPAN GVIETGHRLA KYCKKLNVPF EYNAIAQKWE TIKLEDLKLR 540 EGEFVAVNTL FRFRNLLDDT VAVDSPRDVV LRLIHKIRPN IFIPSILSGS YNAPFFVTRF 600 REVMYHFSSL FDMCDTTLTR EDPMRVVFEK EFYGREIMNV VACEGTARVE RPESYKQWGS 660 RMVRAGLRQL PVEKELVQKL RLMVDKEYKS KEFDVDQDGN WFLQGWKGRL VYASSFWVSV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 5e-41 | 342 | 717 | 3 | 374 | GRAS family transcription factor containing protein, expressed |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00159.1_g00036.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018477386.1 | 0.0 | PREDICTED: scarecrow-like protein 33 | ||||
Refseq | XP_018477387.1 | 0.0 | PREDICTED: scarecrow-like protein 33 | ||||
Swissprot | P0C883 | 0.0 | SCL33_ARATH; Scarecrow-like protein 33 | ||||
TrEMBL | A0A0D3C2S5 | 0.0 | A0A0D3C2S5_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g168030.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29060.1 | 0.0 | GRAS family protein |