PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00156.1_g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C3H | ||||||||
Protein Properties | Length: 496aa MW: 56639.5 Da PI: 7.1698 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.3 | 4e-06 | 322 | 346 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C++++ +G C +G +C+++H+p Rsa1.0_00156.1_g00008.1 322 VADCQYYLLYGRCFFGRSCRYNHPP 346 689********************96 PP | |||||||
2 | zf-CCCH | 27 | 7.7e-09 | 369 | 391 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C +++tG+C+yG +C F+H+p Rsa1.0_00156.1_g00008.1 369 DCEQYLQTGQCSYGLKCWFNHPP 391 7********************96 PP | |||||||
3 | zf-CCCH | 23 | 1.4e-07 | 414 | 435 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C +++ G+C+yG rC+F+H+p Rsa1.0_00156.1_g00008.1 414 CEQYLQKGQCSYGRRCRFNHPP 435 99******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.760.10 | 6.8E-62 | 49 | 225 | IPR023398 | Translation Initiation factor eIF- 4e-like |
SuperFamily | SSF55418 | 4.97E-65 | 54 | 228 | IPR023398 | Translation Initiation factor eIF- 4e-like |
Pfam | PF01652 | 1.1E-47 | 62 | 216 | IPR001040 | Translation Initiation factor eIF- 4e |
PROSITE pattern | PS00813 | 0 | 116 | 139 | IPR019770 | Eukaryotic translation initiation factor 4E (eIF-4E), conserved site |
PROSITE profile | PS50103 | 13.582 | 319 | 347 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.0E-4 | 319 | 346 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.2E-5 | 364 | 391 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.53 | 364 | 392 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.16E-5 | 367 | 390 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-6 | 368 | 391 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-4 | 370 | 389 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.31 | 408 | 435 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.892 | 408 | 436 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-5 | 410 | 435 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-4 | 413 | 433 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.1E-5 | 414 | 435 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006413 | Biological Process | translational initiation | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003743 | Molecular Function | translation initiation factor activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 496 aa Download sequence Send to blast |
MAEEENLDPN TTSLIRLQQH VPAIKAICGG GGGEEGPSKG KGIMCGGKKS KSTTAIEPSH 60 SFQNSWTFWF DNPSSKSSQA TWGSSLRSLY TFATIEEFWS LYNNMHPPTK CVHGADIYCF 120 KDKIEPKWED PVCANGGKWT MMFPKATLES SWLNTLLALV GEQFEQGDVI CGAVLNFRTR 180 GDKISLWTKN AANKEAQLSI GKQWKELLGY TETIGFIFHE DAKTLDRNAK PQEESKEEVL 240 RKEISDRENS EMEIEEEAKE TDTRTEESTS IEETEGQDTD LFTSEAGDRT DWRRKRDHPS 300 DNATQMRHEL DQSSGHPVRT GVADCQYYLL YGRCFFGRSC RYNHPPRNQM GDHTVRPPSA 360 YQVRLGAKDC EQYLQTGQCS YGLKCWFNHP PLTERNQMRH EMVQPSPYPG ARHCEQYLQK 420 GQCSYGRRCR FNHPPAPRGK TRSYIPCPIK PSKPCKMLYQ PCPEKNSLSF QESSVKHHRP 480 EIDDRIQITK NLSLMY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2wmc_A | 2e-87 | 60 | 230 | 3 | 173 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E |
2wmc_B | 2e-87 | 60 | 230 | 3 | 173 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E |
2wmc_C | 2e-87 | 60 | 230 | 3 | 173 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E |
2wmc_D | 2e-87 | 60 | 230 | 3 | 173 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E |
2wmc_E | 2e-87 | 60 | 230 | 3 | 173 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E |
2wmc_F | 2e-87 | 60 | 230 | 3 | 173 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E |
2wmc_G | 2e-87 | 60 | 230 | 3 | 173 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E |
2wmc_H | 2e-87 | 60 | 230 | 3 | 173 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00156.1_g00008.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC068667 | 7e-45 | AC068667.6 Arabidopsis thaliana chromosome 1 BAC F15D2 genomic sequence, complete sequence. | |||
GenBank | CP002684 | 7e-45 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 5e-23 | C3H family protein |