PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00131.1_g00058.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | S1Fa-like | ||||||||
Protein Properties | Length: 70aa MW: 7761.56 Da PI: 11.1191 | ||||||||
Description | S1Fa-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | S1FA | 135.5 | 1.3e-42 | 2 | 70 | 2 | 70 |
S1FA 2 avakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 +++k+e+kGlnPGliv+lv+ggll++flvgn++ly+yaqknlPPrkkkP+skkk+k+eklk+Gv+vPGe Rsa1.0_00131.1_g00058.1 2 KQGKIESKGLNPGLIVILVIGGLLVTFLVGNFVLYTYAQKNLPPRKKKPLSKKKMKKEKLKKGVQVPGE 70 5789****************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD019013 | 1.0E-4 | 5 | 40 | No hit | No description |
Pfam | PF04689 | 4.7E-38 | 6 | 70 | IPR006779 | DNA binding protein S1FA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 70 aa Download sequence Send to blast |
MKQGKIESKG LNPGLIVILV IGGLLVTFLV GNFVLYTYAQ KNLPPRKKKP LSKKKMKKEK 60 LKKGVQVPGE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00131.1_g00058.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC016661 | 3e-58 | AC016661.7 Arabidopsis thaliana chromosome 3 BAC F11F8 genomic sequence, complete sequence. | |||
GenBank | CP002686 | 3e-58 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010104121.2 | 3e-23 | DNA-binding protein S1FA | ||||
Refseq | XP_024026346.1 | 3e-23 | DNA-binding protein S1FA | ||||
Swissprot | Q42337 | 2e-17 | S1FA2_ARATH; DNA-binding protein S1FA2 | ||||
TrEMBL | A0A1J3J4X3 | 8e-23 | A0A1J3J4X3_NOCCA; DNA-binding protein S1FA2 | ||||
STRING | A0A087H8A9 | 2e-23 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2823 | 27 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09735.1 | 3e-11 | S1FA-like DNA-binding protein |