PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00117.1_g00009.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 314aa MW: 35519.6 Da PI: 4.7418

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00117.1_g00009.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.3	1.2e-07	161	207	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE++ R+ +N++f L ++l + + +K +K +iL A++ +++L Rsa1.0_00117.1_g00009.1 161 KAGREKKKREMLNDKFMDLSSVLEPT---RTPKTDKPAILDDAIRVVNQL 207 5669*******************9...9**************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.788	156	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-5	162	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-5	162	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.72E-11	164	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-9	164	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.46E-6	164	208	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MMYQSNEDDD DLFASLCFDH HSNEGEDPYA FIQQTDQENL FPEFGLNLQP EQDHHVCTQF 60 DSFSGNLPQV CSFTGDNNGL GPFCGLVYST NSIGSAQLDL GTHSFRGTTT HVQQEQEQER 120 ACCPVVEINS SSSVEVVKEE FDEECSRKRG RTGPCSKPGT KAGREKKKRE MLNDKFMDLS 180 SVLEPTRTPK TDKPAILDDA IRVVNQLRGE AHELKETNQM LLEEIKSLKE EKNELREEKM 240 VLKSDKEKME QQMRSMAAVP SPGFMPSHPA AFHQNKMAVY GSYGYYPNMP VMPYLLPPSQ 300 RDTSQDQQNW SKAA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	146	168	RKRGRTGPCSKPGTKAGREKKKR
2	162	170	GREKKKREM

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00372	DAP	Transfer from AT3G23210	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00117.1_g00009.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018433039.1	0.0	PREDICTED: transcription factor bHLH34-like
Swissprot	Q9LTC7	1e-125	BH034_ARATH; Transcription factor bHLH34
TrEMBL	A0A0D3ABB4	1e-170	A0A0D3ABB4_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6FUV4	1e-170	A0A3P6FUV4_BRAOL; Uncharacterized protein (Fragment)
STRING	Bo1g102270.1	1e-171	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4026	26	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23210.1	4e-92	bHLH family protein

Publications ? help Back to Top
Li X,Zhang H,Ai Q,Liang G,Yu D Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana. Plant Physiol., 2016. 170(4): p. 2478-93 [PMID:26921305] Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]