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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00107.1_g00034.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
MYB |
Protein Properties |
Length: 421aa MW: 49183.2 Da PI: 6.7322 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00107.1_g00034.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 58.8 | 1.2e-18 | 215 | 261 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g WT+eEd +l+++v+++G + W+ Ia+ ++ gR +kqc++rw+++l
Rsa1.0_00107.1_g00034.1 215 KGQWTAEEDRILIQLVEKYGLRKWSHIAQVLP-GRIGKQCRERWHNHL 261
799*****************************.*************97 PP
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2 | Myb_DNA-binding | 52.1 | 1.5e-16 | 267 | 309 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
+ W++eEd l++ +k+ G++ W+ Ia++++ gRt++++k++w+
Rsa1.0_00107.1_g00034.1 267 KETWSEEEDRVLIEFHKEIGNK-WAEIAKRLP-GRTENSIKNHWN 309
578*******************.*********.***********8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 421 aa
Download sequence Send
to blast |
MENYVNESGF APLNQTIFIR DQDHMKEEDF PFEVVDQSKP TSFLQDFHHL DHDNQFDHHH 60 QYHGSTSSNP LFGIQMTSSC ANNAPYQHCS YQENMVDFYE TKPQLMNHHF QAAENSYFTR 120 NHHQEINLVD DNDPMNLEQN NMMMMRMIPF DYPPIETINK PMNFVMPDEV SCVSADNNSY 180 RAMSFNKTKP LLTRKLSSSS SSSSWKGKKK TTLVKGQWTA EEDRILIQLV EKYGLRKWSH 240 IAQVLPGRIG KQCRERWHNH LRPDIKKETW SEEEDRVLIE FHKEIGNKWA EIAKRLPGRT 300 ENSIKNHWNA TKRRQFSKRK CRSKYPRSSL LQDYIKSLDV GVLSSSSVPA RGRRKVSNKK 360 KDVVAVEEKE EEFYGQDRIV PECVFTDDFG FNEKLLEEGC SIDSLLDDLP QPDIDAFVHG 420 I
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AF176003 | 0.0 | AF176003.2 Arabidopsis thaliana putative transcription factor (MYB98) mRNA, complete cds. |