PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00085.1_g00015.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 269aa    MW: 30825 Da    PI: 10.286
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00085.1_g00015.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.82.5e-10146252181
                              EEEE-..-HHHHT.T-EE--HHH.HTT..................---..--SEEEEEETTS-EEEEEE.......EEETTE.... CS
                       B3   1 ffkvltpsdvlks.grlvlpkkfaeeh..................ggkkeesktltledesgrsWevkliy.....rkksgr.... 58 
                              f+k+l+ sdv+ + +r+ +p k ++++                  ggk   +++  l d++++ W++ ++      + +s +    
  Rsa1.0_00085.1_g00015.1 146 FEKTLSVSDVNPNqSRFLIPFKQLKRNdfltqeessfleqeegnkGGK--PGVEAFLVDQRSEAWSLVFKRwvmkkKESS-Qkgtl 228
                              89999999999887999***********99999999998887775444..358999999999999999955487643333.25899 PP

                              .EEE-TTHHHHHHHHT--TT-EEE CS
                       B3  59 .yvltkGWkeFvkangLkegDfvv 81 
                               yvl +GW++ vk+n+Lk++D + 
  Rsa1.0_00085.1_g00015.1 229 nYVLNRGWNDIVKENKLKAKDKIS 252
                              9*******************9776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037541.6E-34138242IPR005508B3 domain-containing protein
SuperFamilySSF1019361.92E-17142267IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-20142266IPR015300DNA-binding pseudobarrel domain
CDDcd100171.92E-11146266No hitNo description
PROSITE profilePS5086310.588166269IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MRGEDDHYLS RMKKDWPNIR DKVTKALEEA LLRKAKSPSP SRIIKFDLNE PPPPDADDEE  60
QINEAERRDH KVSSGASSRF CNIIDLNKSP REEPPNHDHN ISKNLLNPNP GKRPLKRKGR  120
GSGRLDKAKK QRLKAALDVG DSKLVFEKTL SVSDVNPNQS RFLIPFKQLK RNDFLTQEES  180
SFLEQEEGNK GGKPGVEAFL VDQRSEAWSL VFKRWVMKKK ESSQKGTLNY VLNRGWNDIV  240
KENKLKAKDK ISLWSFRCDG VLCFSLVSN
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00085.1_g00015.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018471263.10.0PREDICTED: putative B3 domain-containing protein At3g49610
TrEMBLA0A078F6L61e-132A0A078F6L6_BRANA; BnaC05g03530D protein
TrEMBLA0A3P6FF101e-132A0A3P6FF10_BRAOL; Uncharacterized protein
STRINGBra015425.1-P1e-128(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2731015
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05930.12e-33B3 family protein