PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00065.1_g00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | AP2 | ||||||||
Protein Properties | Length: 338aa MW: 38070.8 Da PI: 6.358 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.7 | 2.2e-11 | 57 | 111 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 ++GV++++++gr++A+++d s+n ++k+ + g ++ ++ Aa+a++ a++k++g Rsa1.0_00065.1_g00040.1 57 HRGVTRHRWTGRYEAHLWDkNSWNEtQSKKGRQGAYDEEDAAARAYDLAALKYWG 111 79*****************88889998888888*****99*************98 PP | |||||||
2 | AP2 | 50.6 | 4.9e-16 | 154 | 205 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV ++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g Rsa1.0_00065.1_g00040.1 154 SKYRGVAKHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAIAYDVAAIEYRG 205 89****************99966...3.6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.6E-14 | 55 | 120 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.703 | 56 | 119 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.2E-19 | 56 | 125 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-5 | 57 | 68 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.1E-11 | 57 | 119 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.5E-8 | 57 | 111 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.53E-24 | 154 | 215 | No hit | No description |
SuperFamily | SSF54171 | 1.31E-17 | 154 | 215 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.5E-11 | 154 | 205 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-17 | 155 | 213 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.965 | 155 | 213 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.5E-26 | 155 | 219 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-5 | 195 | 215 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0040008 | Biological Process | regulation of growth | ||||
GO:0045723 | Biological Process | positive regulation of fatty acid biosynthetic process | ||||
GO:1901959 | Biological Process | positive regulation of cutin biosynthetic process | ||||
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MHVQDSPVMK EISRRSEKTS VDDKTGDEPS ASSVVPKTKR KRRSQPRDAP PQRSSMHRGV 60 TRHRWTGRYE AHLWDKNSWN ETQSKKGRQG AYDEEDAAAR AYDLAALKYW GRDTVLNFPL 120 CNYEEDIKDM ESQSKEEYIG SLRRKSSGFS RGVSKYRGVA KHHHNGRWEA RIGRVFGNKY 180 LYLGTYATQE EAAIAYDVAA IEYRGLNAVT NFDISRYLKL PAPENPIDAA NTPHSDPSPF 240 INPDHHDSSA LSQSQSSSDD NDDDRKTKLL KSSPCSNAEE VIGPATPPEI APSRRSFPDD 300 IQTYFGCQDS GKVGDDDVIF GGLDSFLTPD FYSEFNDC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00065.1_g00040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY045915 | 0.0 | AY045915.1 Arabidopsis thaliana unknown protein (At1g16060) mRNA, complete cds. | |||
GenBank | AY133880 | 0.0 | AY133880.1 Arabidopsis thaliana clone U10081 unknown protein (At1g16060) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018435322.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X2 | ||||
Swissprot | Q94AN4 | 0.0 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A0D3CAN8 | 0.0 | A0A0D3CAN8_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g021520.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM553 | 27 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 1e-179 | ARIA-interacting double AP2 domain protein |
Publications ? help Back to Top | |||
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