PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00047.1_g00028.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 468aa    MW: 51712.2 Da    PI: 4.5492
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00047.1_g00028.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1149.5e-36291212103
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Fl+k+y++++d++++e++sws+ +nsfvv+d  ef+k  LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F 
  Rsa1.0_00047.1_g00028.1  29 FLSKTYDMVDDPSTNEVVSWSSGNNSFVVWDVPEFSKVFLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFL 105
                              9****************************************************************999.........********* PP

                              XXXXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkkse 103
                              +++k+ll+ i r+ks+
  Rsa1.0_00047.1_g00028.1 106 RDQKQLLKGITRRKSS 121
                              *************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.3E-3825118IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.4E-5725118IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.77E-3425118IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.4E-3029118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-192952IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-196779IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406892IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-198092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MEHVLEPAPS VNSTNPPPIP PPVNTVAPFL SKTYDMVDDP STNEVVSWSS GNNSFVVWDV  60
PEFSKVFLPK YFKHNNFSSF VRQLNTYGFR KVDPDRWEFA NEGFLRDQKQ LLKGITRRKS  120
SHVQQQQNHQ VQNSSLTACV EVGKFGIAEE EVERLKRDKN VLTQEIVRLR HQQQATEHQL  180
QDAVQKVQAM EHRQQQMMSF LAKAVRSPGF LNQLVVVQQS NDGGRQIQGS SNKKRRLPEE  240
ADRQIVKYQP SINEAAQTML RQFLNMSSSN ESESVSDNPG SFLLGDVPSA NSLNSSNTVS  300
GETQAEVSPD SAHSAMNQVP EAGLAHHPQA GLVQPTDQGV VAAASWSPES ELLVGCETGN  360
GECLDPIVAA LGDAVTPEGE GEMKALLNEV PELPGVQDPF WEQFFADEAP VSGETDETVT  420
GSVENSDLAM EQELSEWTRD QQQVNHITEQ MGFLSSETHH GGEVVKGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-242612117123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00047.1_g00028.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: DNA-binding capacity is reduced by HSBP in vitro. {ECO:0000269|PubMed:20388662}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018442501.10.0PREDICTED: heat stress transcription factor A-1b isoform X2
SwissprotO818210.0HFA1B_ARATH; Heat stress transcription factor A-1b
TrEMBLA0A3P6D8B40.0A0A3P6D8B4_BRACM; Uncharacterized protein
STRINGBo00967s020.10.0(Brassica oleracea)
STRINGBo9g151630.10.0(Brassica oleracea)
STRINGBo9g161770.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22362371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.20.0heat shock factor 3
Publications ? help Back to Top
  1. Hsu SF,Jinn TL
    AtHSBP functions in seed development and the motif is required for subcellular localization and interaction with AtHSFs.
    Plant Signal Behav, 2010. 5(8): p. 1042-4
    [PMID:20657173]
  2. Bechtold U, et al.
    Arabidopsis HEAT SHOCK TRANSCRIPTION FACTORA1b overexpression enhances water productivity, resistance to drought, and infection.
    J. Exp. Bot., 2013. 64(11): p. 3467-81
    [PMID:23828547]
  3. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]