PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00047.1_g00028.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | HSF | ||||||||
Protein Properties | Length: 468aa MW: 51712.2 Da PI: 4.5492 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 114 | 9.5e-36 | 29 | 121 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 Fl+k+y++++d++++e++sws+ +nsfvv+d ef+k LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F Rsa1.0_00047.1_g00028.1 29 FLSKTYDMVDDPSTNEVVSWSSGNNSFVVWDVPEFSKVFLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFL 105 9****************************************************************999.........********* PP XXXXXXXXXXXXXXXX CS HSF_DNA-bind 88 kgkkellekikrkkse 103 +++k+ll+ i r+ks+ Rsa1.0_00047.1_g00028.1 106 RDQKQLLKGITRRKSS 121 *************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.3E-38 | 25 | 118 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 3.4E-57 | 25 | 118 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.77E-34 | 25 | 118 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.4E-30 | 29 | 118 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-19 | 29 | 52 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-19 | 67 | 79 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 68 | 92 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-19 | 80 | 92 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence Send to blast |
MEHVLEPAPS VNSTNPPPIP PPVNTVAPFL SKTYDMVDDP STNEVVSWSS GNNSFVVWDV 60 PEFSKVFLPK YFKHNNFSSF VRQLNTYGFR KVDPDRWEFA NEGFLRDQKQ LLKGITRRKS 120 SHVQQQQNHQ VQNSSLTACV EVGKFGIAEE EVERLKRDKN VLTQEIVRLR HQQQATEHQL 180 QDAVQKVQAM EHRQQQMMSF LAKAVRSPGF LNQLVVVQQS NDGGRQIQGS SNKKRRLPEE 240 ADRQIVKYQP SINEAAQTML RQFLNMSSSN ESESVSDNPG SFLLGDVPSA NSLNSSNTVS 300 GETQAEVSPD SAHSAMNQVP EAGLAHHPQA GLVQPTDQGV VAAASWSPES ELLVGCETGN 360 GECLDPIVAA LGDAVTPEGE GEMKALLNEV PELPGVQDPF WEQFFADEAP VSGETDETVT 420 GSVENSDLAM EQELSEWTRD QQQVNHITEQ MGFLSSETHH GGEVVKGI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 2e-24 | 26 | 121 | 17 | 123 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00047.1_g00028.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: DNA-binding capacity is reduced by HSBP in vitro. {ECO:0000269|PubMed:20388662}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018442501.1 | 0.0 | PREDICTED: heat stress transcription factor A-1b isoform X2 | ||||
Swissprot | O81821 | 0.0 | HFA1B_ARATH; Heat stress transcription factor A-1b | ||||
TrEMBL | A0A3P6D8B4 | 0.0 | A0A3P6D8B4_BRACM; Uncharacterized protein | ||||
STRING | Bo00967s020.1 | 0.0 | (Brassica oleracea) | ||||
STRING | Bo9g151630.1 | 0.0 | (Brassica oleracea) | ||||
STRING | Bo9g161770.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2236 | 23 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16820.2 | 0.0 | heat shock factor 3 |
Publications ? help Back to Top | |||
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