PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00032.1_g00025.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 513aa    MW: 57513.8 Da    PI: 4.8473
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00032.1_g00025.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS248.52.7e-761485132374
                     GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl...f 84 
                              ++lL  cA a+++++ +++q++++ lselas++gd+++Rla++ + AL+++++   s + ++ ++ + +   s+e+ +++k+   f
  Rsa1.0_00032.1_g00025.1 148 EQLLNPCALAITARNSSRVQHYICVLSELASSSGDANHRLASFGLSALKKHIST--SFVPSSPSSVTFA---SAEVKMFQKTllkF 228
                              689**************************************************9..3333333333333...4455555555667* PP

                     GRAS  85 sevsPilkfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg....skeeleet 161
                              +evsP++ + + +aN+aIl+ +++e    + +Hi+D+++s+G+QWp+Ll+aL +Rpegpp ++RiT+v++ +++          ++
  Rsa1.0_00032.1_g00025.1 229 YEVSPWFALPNNMANSAILQILAQEprdkKDLHILDIGVSHGMQWPTLLEALCCRPEGPPlQVRITVVSDLTADipfsVGPPSYNY 314
                              ************************99888889************************99999*********99999998888999** PP

                     GRAS 162 gerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247
                              +++L  fA++l+++++++v+        +++ ++++p+E+ +V+ +++l++l     +++++r e Lk+++sl+Pk v+++e+  +
  Rsa1.0_00032.1_g00025.1 315 ASQLIGFARSLNINLQISVI-------DKFQLIDTSPHETFIVCAQFRLYQLK---NTIPDARCEALKALRSLNPKGVILCEHYGE 390
                              ******************96.......566889*******************8...78888889******************9755 PP

                     GRAS 248 h...nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330
                                  ++ +F++ f+++l+y ++++ds++ ++    +e+++ Er+l++ e+++v++ +g+      e +e W er+++ GF++ +++
  Rsa1.0_00032.1_g00025.1 391 GsssSNVDFAADFSKKLDYLWKFLDSTSYGF----KEENSEERKLMEGEATKVLMSSGDT----SEGKEMWYERMRKTGFSAEAFG 468
                              52125559*******************9997....8888889999999***********9....9999****************** PP

                     GRAS 331 ekaakqaklllrkvk.sdgyrveeesgslv..lgWkdrpLvsvSaWr 374
                              e+a + ak+llrk++ +  ++++ e+g  +  l Wk++++ ++S W+
  Rsa1.0_00032.1_g00025.1 469 EEAIDGAKSLLRKYDnN--WEIKMEDGDTFagLLWKGEEVSFCSLWK 513
                              ***************44..6666444433336**************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.94121492IPR005202Transcription factor GRAS
PfamPF035149.4E-74148513IPR005202Transcription factor GRAS
Gene3DG3DSA:3.40.50.1509.3E-4228295IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MSLEETEPPS QTLDNVLGWF DDSISLTPLP GFSDSDLLNE FDWSQTWEWD HQTQTQDPGF  60
DFLHSYSQDL NAYIGCEAAN VEVATGVPVI DSDPPPVLQL PNDQSKKRNR DELNDPHVVK  120
RSARSKKKAD KSSEVSRKDV NKVERWAEQL LNPCALAITA RNSSRVQHYI CVLSELASSS  180
GDANHRLASF GLSALKKHIS TSFVPSSPSS VTFASAEVKM FQKTLLKFYE VSPWFALPNN  240
MANSAILQIL AQEPRDKKDL HILDIGVSHG MQWPTLLEAL CCRPEGPPLQ VRITVVSDLT  300
ADIPFSVGPP SYNYASQLIG FARSLNINLQ ISVIDKFQLI DTSPHETFIV CAQFRLYQLK  360
NTIPDARCEA LKALRSLNPK GVILCEHYGE GSSSSNVDFA ADFSKKLDYL WKFLDSTSYG  420
FKEENSEERK LMEGEATKVL MSSGDTSEGK EMWYERMRKT GFSAEAFGEE AIDGAKSLLR  480
KYDNNWEIKM EDGDTFAGLL WKGEEVSFCS LWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B4e-3213951379473Protein SHORT-ROOT
5b3h_B2e-3213951325419Protein SHORT-ROOT
5b3h_E2e-3213951325419Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00032.1_g00025.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX2425490.0JX242549.1 Hirschfeldia incana isolate HiNSP1 nodulation signaling pathway 1-like protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022575454.10.0scarecrow-like protein 29 isoform X1
RefseqXP_022575455.10.0scarecrow-like protein 29 isoform X2
SwissprotQ9LRW30.0SCL29_ARATH; Scarecrow-like protein 29
TrEMBLJ7HA590.0J7HA59_BRARR; Nodulation signaling pathway 1-like protein
STRINGBra027378.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107472834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.10.0GRAS family protein