PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00032.1_g00017.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | GRF | ||||||||
Protein Properties | Length: 405aa MW: 45500.8 Da PI: 7.7451 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.7 | 2.4e-24 | 81 | 125 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CE+H+hrgr+r rks ++ Rsa1.0_00032.1_g00017.1 81 DPEPGRCRRTDGKKWRCSREAYPDSKYCEKHMHRGRNRARKSIDQ 125 79***************************************9875 PP | |||||||
2 | QLQ | 63.5 | 5.5e-22 | 16 | 51 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT++Q+q+L+sQ+l+yKy+++++PvPpeL++ i++ Rsa1.0_00032.1_g00017.1 16 PFTPTQWQELESQALIYKYMVSGVPVPPELIFSIRR 51 9*******************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 4.7E-14 | 15 | 51 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.278 | 16 | 51 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 4.9E-16 | 16 | 50 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.182 | 81 | 125 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.4E-20 | 82 | 122 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence Send to blast |
MMSLSGNGGR TIERPPFTPT QWQELESQAL IYKYMVSGVP VPPELIFSIR RSLDSSLVSR 60 LLPHQSLGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE AYPDSKYCEK HMHRGRNRAR 120 KSIDQNQTTA PLTSPSLSFP NNNNPSPTLS SSSASTYSAT SSSPSIDAFS NINRSGVGSS 180 ISRGYFNNHS LDYPYPLSSP KQQQQQQTLH HASALSLHQN TSTASQFNVL ASSTDHKDFR 240 YFQGIGERVG VGVGVGVGVG ERTFFPEASR SYQDSPYHHQ QPLATVMNDP YHCSTDHKVD 300 HHHSYSSASS SSQHQHDQDH EHRQQQQQCF VMGADMFNKP TRTVFSNTSR QDQEEEEKDS 360 SETKKSLHHF FGEDWAQNKN SSDSWLDLSS HSRLDPGSNL HSDLC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Acts together with GIF1 for the development of appropriate leaf size and shape through the promotion and/or maintenance of cell proliferation activity in leaf primordia. {ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:15960617}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00032.1_g00017.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY102638 | 0.0 | AY102638.1 Arabidopsis thaliana transcription activator (GRF5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018486286.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: growth-regulating factor 5-like | ||||
Swissprot | Q8L8A6 | 0.0 | GRF5_ARATH; Growth-regulating factor 5 | ||||
TrEMBL | A0A397ZL32 | 0.0 | A0A397ZL32_BRACM; Uncharacterized protein | ||||
STRING | Bo5g131870.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4567 | 26 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 1e-157 | growth-regulating factor 5 |