PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00030.1_g00036.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | GATA | ||||||||
Protein Properties | Length: 142aa MW: 15677.9 Da PI: 10.2391 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.3 | 1e-18 | 40 | 74 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ Cgt+kTplWR+gp g+k+LCnaCG++++kk++ Rsa1.0_00030.1_g00036.1 40 CAICGTSKTPLWRSGPTGPKSLCNACGIRNKKKKS 74 999*****************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.50.10 | 7.5E-16 | 34 | 82 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 12.967 | 34 | 70 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 8.08E-14 | 34 | 85 | No hit | No description |
SMART | SM00401 | 3.1E-13 | 34 | 87 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 3.92E-11 | 40 | 68 | No hit | No description |
Pfam | PF00320 | 1.0E-16 | 40 | 73 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 40 | 65 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MLDHTEKISD SEAMKSKFTS KYATEEEISS SSSSNEKKSC AICGTSKTPL WRSGPTGPKS 60 LCNACGIRNK KKKSTVKNKK KNHTRSNPKL GDSLKERLLE LGREVMMQRS TDGGDQRRKK 120 LGEEEQAAVL LMALSYASSV YA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00335 | DAP | Transfer from AT3G06740 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00030.1_g00036.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013646381.1 | 2e-70 | GATA transcription factor 15-like | ||||
Swissprot | Q8LG10 | 3e-66 | GAT15_ARATH; GATA transcription factor 15 | ||||
TrEMBL | A0A1J3ELK9 | 9e-70 | A0A1J3ELK9_NOCCA; GATA transcription factor 15 | ||||
STRING | Bo1g147740.1 | 7e-67 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5050 | 26 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06740.1 | 1e-54 | GATA transcription factor 15 |
Publications ? help Back to Top | |||
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