PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00007.1_g00017.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 216aa    MW: 23891.1 Da    PI: 7.6061
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00007.1_g00017.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.91.9e-2079113135
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                              C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  Rsa1.0_00007.1_g00017.1  79 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 113
                              ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.5E-1973125IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.14E-1375115No hitNo description
Gene3DG3DSA:3.30.50.103.2E-1777113IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011413.78477109IPR000679Zinc finger, GATA-type
CDDcd002022.49E-1478110No hitNo description
PfamPF003204.6E-1879113IPR000679Zinc finger, GATA-type
PROSITE patternPS00344079104IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MGFSMFFSSE NEVVHHSSPY ASVDCTLSLG TPATRLCNDD DDRRFSSHTS NRLGWDFLQG  60
SKKGSGGGGG GNNLLPRRCA NCDTTSTPLW RNGPRGPKSL CNACGIRFKK EERRASTTRI  120
STSGGGSTAA GVPTSDQHGG ANYYYNNNNH YASPSPWIHH QHHNTQRVPY YTSANNEYYS  180
FVDDVRAENH DVTADPFLSW RLNVADQTGL MHDFMM
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Regulates both flower and shoot apical meristem (SAM) development, especially for establishing organ boundaries in shoots and flowers, probably by controlling the number and position of WUS-expressing cells (PubMed:23335616, PubMed:25077795). {ECO:0000250, ECO:0000269|PubMed:23335616, ECO:0000269|PubMed:25077795}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00007.1_g00017.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by HAN. {ECO:0000269|PubMed:23335616}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018449715.11e-162PREDICTED: GATA transcription factor 19
SwissprotQ6QPM21e-103GAT19_ARATH; GATA transcription factor 19
TrEMBLA0A3P6B1R11e-123A0A3P6B1R1_BRAOL; Uncharacterized protein
STRINGBra010563.1-P1e-115(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61591746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.16e-88GATA transcription factor 19
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]