PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00007.1_g00006.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 319aa    MW: 34474.2 Da    PI: 8.0727
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00007.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_178.67.8e-25227289163
                              XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                              e+elkr++rkq+NRe+ArrsR+RK+ae+e+L+++v++L++eN++L++el++l+ e++klk+e+
  Rsa1.0_00007.1_g00006.1 227 ERELKRQKRKQSNRESARRSRLRKQAECEQLQQRVESLTSENQTLRDELQRLSGECEKLKTEN 289
                              89**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.1E-221106IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1701.9E-20224287No hitNo description
SMARTSM003385.7E-23227291IPR004827Basic-leucine zipper domain
PfamPF001701.5E-22227289IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.622229292IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.53E-12230286No hitNo description
CDDcd147021.99E-23232282No hitNo description
PROSITE patternPS000360234249IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGTSEEKTPF KPTSKPASSA QDVPPTPYSD WSNSMQVRVK CTTLASHAYY GGGGTPSPFF  60
PSPVGSPSPH PYMWGAQQHM MPPYGTPVPY PAMYPPGTVY AHPAMPMPPA SGPTNTETVK  120
DQPSGKKSKG SLKRKGEKAP SGSGNDAVSQ SDESVTAGSS DENANHQEQG SVRKPSFGQM  180
LADASSQSNT TGEIQGSMPM KPVVPVTNLN MGMDLWSSQA GVAVKDEREL KRQKRKQSNR  240
ESARRSRLRK QAECEQLQQR VESLTSENQT LRDELQRLSG ECEKLKTENN SIQDELVRVH  300
GPEAVANLEQ NAAGSKDAE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1243249RRSRLRK
2243250RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00007.1_g00006.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX839210.0X83921.1 B.napus mRNA for G-Box binding factor 1B (partial).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018451840.10.0PREDICTED: G-box-binding factor 1-like isoform X1
RefseqXP_018451841.10.0PREDICTED: G-box-binding factor 1-like isoform X1
SwissprotP427741e-178GBF1_ARATH; G-box-binding factor 1
TrEMBLA0A1J3DZ240.0A0A1J3DZ24_NOCCA; G-box-binding factor 1
STRINGBra010572.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72742643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.11e-157G-box binding factor 1
Publications ? help Back to Top
  1. Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S
    Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development.
    Mol Plant, 2013. 6(6): p. 1758-68
    [PMID:24157607]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Karumuri S,Bandopadhyay R
    In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.
    Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9
    [PMID:25630103]
  4. Smykowski A,Zimmermann P,Zentgraf U
    CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 1164-7
    [PMID:26826725]
  5. Smykowski A,Fischer SM,Zentgraf U
    Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1.
    Plants (Basel), 2015. 4(3): p. 691-709
    [PMID:27135347]
  6. Giri MK, et al.
    GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana.
    Plant J., 2017. 91(5): p. 802-815
    [PMID:28622438]