PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9_p17
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ARR-B
Protein Properties Length: 724aa    MW: 80451.9 Da    PI: 5.9335
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9_p17genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like72.85.1e-23184237155
   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
               k ++ Wt +LH+ F++a++++ G +kA+Pk+ile+m++  Lt+e+v+SHLQkYR 
  RrC9_p17 184 KSKITWTDDLHDLFLQAIRHI-GLDKAVPKKILEFMNISYLTRENVASHLQKYRQ 237
               6799*****************.********************************5 PP
2Response_reg53.31.6e-1858926110
                   EEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHHH CS
  Response_reg  26 vaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvka 110
                   v +++d++eal +lk ++  +Dli++D  mp+m+Gl+l  +i++e  +lp+iv+++       +e l  Ga++f+ Kp++  el k 
      RrC9_p17   5 VIAVKDSREALSTLKIERnnIDLIVTDYYMPDMNGLQLKNQITREFGNLPVIVMSSDTG--KEHESLTCGAMGFIQKPIKATELAKI 89 
                   5689999*****99555555**********************99999********6555..6799****************999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011026.143194IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.26E-16388No hitNo description
Gene3DG3DSA:3.40.50.23002.6E-19395No hitNo description
SuperFamilySSF521723.42E-18398IPR011006CheY-like superfamily
PfamPF000721.1E-15489IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:1.10.10.603.9E-23182241IPR009057Homeodomain-like
SuperFamilySSF466899.32E-18182241IPR009057Homeodomain-like
TIGRFAMsTIGR015578.0E-26184237IPR006447Myb domain, plants
PfamPF002491.6E-5188236IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MEITVIAVKD SREALSTLKI ERNNIDLIVT DYYMPDMNGL QLKNQITREF GNLPVIVMSS  60
DTGKEHESLT CGAMGFIQKP IKATELAKIY QLAVTCKRNG KSTLWTENNH NDTYVSIPQR  120
IQLVPEQDNL VMTTKKKLPR PDSRSMNSSN GSCVSTNASR KNKKIKANVD SGDDVEALSQ  180
PSKKSKITWT DDLHDLFLQA IRHIGLDKAV PKKILEFMNI SYLTRENVAS HLQKYRQFLR  240
KVAERGSLCS NMLPSNGIDS TYPYPRITEP CYNNYTSSSS WYGTSLSNRS CYSKPGHGIG  300
QSRLLSNTSD PVRFNQMPYN YMDRSSTYEP HRLGSNLNQP IESNLNYSSQ NEGRRSFLEP  360
TANKTSQTSQ VLGFEQNGLS AINGSGFNNN MLISCGSLAP NQPGTNSYKF SISTQQGILS  420
AYGSSTSTQP GIRSHISLTP NQPGRSSYGS LTAAKPGMSS HESLSLNQQG MSSYENLTLN  480
QPEMNNHGSL PPDQPQLSSY GNLSSNQLGL SSHGILTPNQ PGLKIYGTET HNAGLNNFGS  540
LTTHQPGSSN FSYGLQSFVD NENIAYKPQP HPHSNATAQP NIEIPQQENL SLYDELGNIN  600
ELLCDISNFQ LEHNKQQEAV STTQFELPSN FSTEMNQLFS FEKDDDWTFV NTNQGHSIGE  660
TSNNVAPEAN SQTFNMSTNH DQEQEAQDFV DWSFLNPEDL ANEYDFMDSL FNGMNGKGFD  720
DPRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-19183243464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1891950.0AC189195.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB004B12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018443368.10.0PREDICTED: putative two-component response regulator ARR21
SwissprotQ9LYP50.0ARR21_ARATH; Putative two-component response regulator ARR21
TrEMBLA0A3P6DDP20.0A0A3P6DDP2_BRACM; Uncharacterized protein
STRINGBra009284.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61131737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.11e-176response regulator 21