PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9253_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Dof
Protein Properties Length: 289aa    MW: 31830.2 Da    PI: 9.6762
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9253_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.47.8e-393494262
      zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                ++++++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++rknk+ss
  RrC9253_p1 34 PQEKVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKRSS 94
                6899******************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-303392IPR003851Zinc finger, Dof-type
PfamPF027016.3E-333692IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.7053892IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104076IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009639Biological Processresponse to red or far red light
GO:0009845Biological Processseed germination
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MATTTRPNAT AANVGSGGNN NNTATTMESR KARPQEKVNC PRCNSTNTKF CYYNNYSLTQ  60
PRYFCKGCRR YWTEGGSLRN VPVGGSSRKN KRSSTPLASH SNPKLPDLNP PVLFSSQIPN  120
KSSKDLNLLS FPVMQDHHHG MSQFLHMPKI ENNNTSSSIY ASSSPVSALE LLRSNGVSSR  180
GMNTFLPGQM LDSNSVIYSS LGFPTMVDYK QSNNDLSFSI DHRQGIGNNT INSNQRPEDN  240
NHADDMNGAS RVLFPFSDMK ELSSTAQDKS HGNNTYWSGM FTNTGGSSW
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9794810.0JN979481.1 Brassica rapa subsp. pekinensis auxin response factor 18-1 (ARF18-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018492511.10.0PREDICTED: dof zinc finger protein DOF3.7 isoform X1
SwissprotQ433851e-161DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBLA0A0D3DUY20.0A0A0D3DUY2_BRAOL; Uncharacterized protein
STRINGBo8g097330.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25282673
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.41e-171Dof family protein