PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC8749_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 426aa MW: 47810.5 Da PI: 6.5091 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66.2 | 3.3e-21 | 9 | 53 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k+ien+ rq tf+kR+ngilKKA+ELSvLCd++ +++fs+ gk RrC8749_p1 9 KKIENSAGRQATFAKRKNGILKKASELSVLCDVDLVLLMFSPAGK 53 68****************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.44E-24 | 1 | 84 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.9E-29 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 24.306 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.4E-18 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.1E-20 | 10 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.4E-18 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.4E-18 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0080092 | Biological Process | regulation of pollen tube growth | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence Send to blast |
MGRVKLKIKK IENSAGRQAT FAKRKNGILK KASELSVLCD VDLVLLMFSP AGKPSLCCAS 60 RSGVEEVIAK FSQVTPDERA KRKIEALEDL STQARILQDR ISEIHGRLRF WTEPDKINNV 120 EDLGQLEISI RQSLDQLRAH KEHFGQQQQH EMQIENANFV KDWSTSLLQD GIQIPLEQQL 180 QSMPWILNNN TTNVVTEEHN SMPQREVECS ASSSFGSYPG YFGTGKSPEI TISGQETSLL 240 DELTNGHLKP QQQFTDNNII PYIPSLQNDL NHHQTLPLPL HPPPVFNFPM NQREYHMNGF 300 FEAPPPGASA YNNITNQARF GSSNSSSLPC SISMLDEYLF SQIQREEEKM SCRVLKLVPR 360 RSKTSGVNEM LLLSVSSALP LLWCGFLFVM QGLVVVANFC FTWLGADVLF VPLEGYLGII 420 GANRCS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018481144.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL30 isoform X1 | ||||
Refseq | XP_018481145.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL30 isoform X2 | ||||
Refseq | XP_018481146.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL30 isoform X2 | ||||
Swissprot | Q1PFA4 | 0.0 | AGL30_ARATH; Agamous-like MADS-box protein AGL30 | ||||
TrEMBL | A0A397Z5H2 | 0.0 | A0A397Z5H2_BRACM; Uncharacterized protein | ||||
STRING | Bra024792.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8754 | 25 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03060.2 | 1e-152 | AGAMOUS-like 30 |
Publications ? help Back to Top | |||
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