PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8749_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 426aa    MW: 47810.5 Da    PI: 6.5091
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8749_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.23.3e-21953145
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                k+ien+  rq tf+kR+ngilKKA+ELSvLCd++  +++fs+ gk
  RrC8749_p1  9 KKIENSAGRQATFAKRKNGILKKASELSVLCDVDLVLLMFSPAGK 53
                68****************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.44E-24184IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-29160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.306153IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-18323IPR002100Transcription factor, MADS-box
PfamPF003194.1E-201054IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-182338IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-183859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MGRVKLKIKK IENSAGRQAT FAKRKNGILK KASELSVLCD VDLVLLMFSP AGKPSLCCAS  60
RSGVEEVIAK FSQVTPDERA KRKIEALEDL STQARILQDR ISEIHGRLRF WTEPDKINNV  120
EDLGQLEISI RQSLDQLRAH KEHFGQQQQH EMQIENANFV KDWSTSLLQD GIQIPLEQQL  180
QSMPWILNNN TTNVVTEEHN SMPQREVECS ASSSFGSYPG YFGTGKSPEI TISGQETSLL  240
DELTNGHLKP QQQFTDNNII PYIPSLQNDL NHHQTLPLPL HPPPVFNFPM NQREYHMNGF  300
FEAPPPGASA YNNITNQARF GSSNSSSLPC SISMLDEYLF SQIQREEEKM SCRVLKLVPR  360
RSKTSGVNEM LLLSVSSALP LLWCGFLFVM QGLVVVANFC FTWLGADVLF VPLEGYLGII  420
GANRCS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481144.10.0PREDICTED: agamous-like MADS-box protein AGL30 isoform X1
RefseqXP_018481145.10.0PREDICTED: agamous-like MADS-box protein AGL30 isoform X2
RefseqXP_018481146.10.0PREDICTED: agamous-like MADS-box protein AGL30 isoform X2
SwissprotQ1PFA40.0AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLA0A397Z5H20.0A0A397Z5H2_BRACM; Uncharacterized protein
STRINGBra024792.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87542539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.21e-152AGAMOUS-like 30
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]