PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC8749_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

M-type_MADS

Protein Properties

Length: 426aa MW: 47810.5 Da PI: 6.5091

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC8749_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	66.2	3.3e-21	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k+ien+ rq tf+kR+ngilKKA+ELSvLCd++ +++fs+ gk RrC8749_p1 9 KKIENSAGRQATFAKRKNGILKKASELSVLCDVDLVLLMFSPAGK 53 68****************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	1.44E-24	1	84	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.9E-29	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	24.306	1	53	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.4E-18	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.1E-20	10	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.4E-18	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.4E-18	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence Send to blast
MGRVKLKIKK IENSAGRQAT FAKRKNGILK KASELSVLCD VDLVLLMFSP AGKPSLCCAS 60 RSGVEEVIAK FSQVTPDERA KRKIEALEDL STQARILQDR ISEIHGRLRF WTEPDKINNV 120 EDLGQLEISI RQSLDQLRAH KEHFGQQQQH EMQIENANFV KDWSTSLLQD GIQIPLEQQL 180 QSMPWILNNN TTNVVTEEHN SMPQREVECS ASSSFGSYPG YFGTGKSPEI TISGQETSLL 240 DELTNGHLKP QQQFTDNNII PYIPSLQNDL NHHQTLPLPL HPPPVFNFPM NQREYHMNGF 300 FEAPPPGASA YNNITNQARF GSSNSSSLPC SISMLDEYLF SQIQREEEKM SCRVLKLVPR 360 RSKTSGVNEM LLLSVSSALP LLWCGFLFVM QGLVVVANFC FTWLGADVLF VPLEGYLGII 420 GANRCS

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence Send to blast

MGRVKLKIKK IENSAGRQAT FAKRKNGILK KASELSVLCD VDLVLLMFSP AGKPSLCCAS  60
RSGVEEVIAK FSQVTPDERA KRKIEALEDL STQARILQDR ISEIHGRLRF WTEPDKINNV  120
EDLGQLEISI RQSLDQLRAH KEHFGQQQQH EMQIENANFV KDWSTSLLQD GIQIPLEQQL  180
QSMPWILNNN TTNVVTEEHN SMPQREVECS ASSSFGSYPG YFGTGKSPEI TISGQETSLL  240
DELTNGHLKP QQQFTDNNII PYIPSLQNDL NHHQTLPLPL HPPPVFNFPM NQREYHMNGF  300
FEAPPPGASA YNNITNQARF GSSNSSSLPC SISMLDEYLF SQIQREEEKM SCRVLKLVPR  360
RSKTSGVNEM LLLSVSSALP LLWCGFLFVM QGLVVVANFC FTWLGADVLF VPLEGYLGII  420
GANRCS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018481144.1	0.0	PREDICTED: agamous-like MADS-box protein AGL30 isoform X1
Refseq	XP_018481145.1	0.0	PREDICTED: agamous-like MADS-box protein AGL30 isoform X2
Refseq	XP_018481146.1	0.0	PREDICTED: agamous-like MADS-box protein AGL30 isoform X2
Swissprot	Q1PFA4	0.0	AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBL	A0A397Z5H2	0.0	A0A397Z5H2_BRACM; Uncharacterized protein
STRING	Bra024792.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8754	25	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	1e-152	AGAMOUS-like 30

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]