PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC7859_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bHLH | ||||||||
Protein Properties | Length: 344aa MW: 38684.5 Da PI: 5.1438 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.1 | 1.3e-07 | 191 | 237 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE++ R+ +N++f L ++l + + +K +K +iL A++ +++L RrC7859_p2 191 KAGREKKKREMLNDKFMDLSSVLEPT---RTPKTDKPAILDDAIRVVNQL 237 5669*********************9...9****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.788 | 186 | 237 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-5 | 192 | 237 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-5 | 192 | 243 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.6E-10 | 194 | 259 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.04E-6 | 194 | 238 | No hit | No description |
SuperFamily | SSF47459 | 6.94E-11 | 194 | 261 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
IYFPLHTVST YICLLLLCVS LSPLTILHTL RFCIHSLMMY QSNEDDDDLF ASLCFDHHSN 60 GGEDPYAFIQ TDQENLFPEF GLNLQPEQDH HVCTVGGDQF DSFSGDNNGL GGPFGGLVYS 120 IGSSAQLDLG THSFRGTAST HVQQEQEQER ACCPVVEINS SSSVEVFKEE FEEECSRKRG 180 RTGPCSKPGT KAGREKKKRE MLNDKFMDLS SVLEPTRTPK TDKPAILDDA IRVVNQLRGE 240 AHELKETNQM LLEEIKSLKA EKNELREEKM VLKSDKEKME QQMRSMAAVP SPGFMPSHPA 300 AFHQNKMAVY GSYGYYPNMP VMPYLLPPSQ RDTSQDQQNW SKAA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 176 | 198 | RKRGRTGPCSKPGTKAGREKKKR |
2 | 192 | 200 | GREKKKREM |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00372 | DAP | Transfer from AT3G23210 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018433039.1 | 0.0 | PREDICTED: transcription factor bHLH34-like | ||||
Swissprot | Q9LTC7 | 1e-119 | BH034_ARATH; Transcription factor bHLH34 | ||||
TrEMBL | A0A0D3ABB4 | 0.0 | A0A0D3ABB4_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6FUV4 | 0.0 | A0A3P6FUV4_BRAOL; Uncharacterized protein (Fragment) | ||||
STRING | Bo1g102270.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4026 | 26 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23210.1 | 1e-99 | bHLH family protein |
Publications ? help Back to Top | |||
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