PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC7376_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 270aa MW: 31149.7 Da PI: 6.318 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.8 | 3.8e-18 | 74 | 126 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++ eq+++Le+ Fe ++++ e++ +LAk lg++ rq+ +WFqNrRa++k RrC7376_p2 74 KKRLQLEQVKVLEKSFELGNKLDPERKIQLAKALGMQPRQIAIWFQNRRARWK 126 4457889*********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 125.5 | 2.3e-40 | 72 | 164 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekk+rl+ eqvk+LE+sFe +kL+perK +la++Lg+qprq+a+WFqnrRAR+kt+qlE+dy+aLk+++d+lk++n++L +++++L +e+++ RrC7376_p2 72 EKKKRLQLEQVKVLEKSFELGNKLDPERKIQLAKALGMQPRQIAIWFQNRRARWKTRQLERDYDALKKQFDSLKSDNDSLLAHNKKLLAEVMS 164 69*************************************************************************************999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.15E-19 | 67 | 130 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.7E-17 | 71 | 132 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 16.082 | 72 | 128 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.67E-16 | 73 | 129 | No hit | No description |
Pfam | PF00046 | 2.3E-15 | 74 | 126 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-19 | 76 | 136 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 2.8E-5 | 99 | 108 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 103 | 126 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.8E-5 | 108 | 124 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.2E-16 | 129 | 168 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MAFPQHGFMF QQLHEDITPD QLPSCLPPHP FNGGGNYMMN RSMSLTNVRD DPHQSVDEEN 60 LSDDGSHMML GEKKKRLQLE QVKVLEKSFE LGNKLDPERK IQLAKALGMQ PRQIAIWFQN 120 RRARWKTRQL ERDYDALKKQ FDSLKSDNDS LLAHNKKLLA EVMSLKNKDC NEASIIKRET 180 EASWSNNGST ENSSDINLEI PRETTTTHVN TIKNLFPSSI PCSTHNHDHH QQNNEMVQEE 240 SFCNMFNGID ETTSAGYWGW SDPNHNHQFN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00322 | DAP | Transfer from AT3G01220 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:12644682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK228890 | 0.0 | AK228890.1 Arabidopsis thaliana mRNA for putative homeobox-leucine zipper protein, complete cds, clone: RAFL16-20-K05. | |||
GenBank | AY087631 | 0.0 | AY087631.1 Arabidopsis thaliana clone 3722 mRNA, complete sequence. | |||
GenBank | BT029221 | 0.0 | BT029221.1 Arabidopsis thaliana At3g01220 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009147412.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-20 | ||||
Refseq | XP_013640328.1 | 0.0 | homeobox-leucine zipper protein ATHB-20 | ||||
Swissprot | Q8LAT0 | 1e-166 | ATB20_ARATH; Homeobox-leucine zipper protein ATHB-20 | ||||
TrEMBL | A0A397ZGU6 | 0.0 | A0A397ZGU6_BRACM; Uncharacterized protein | ||||
TrEMBL | A0A3P5ZN36 | 0.0 | A0A3P5ZN36_BRACM; Uncharacterized protein (Fragment) | ||||
TrEMBL | M4FDG4 | 0.0 | M4FDG4_BRARP; Uncharacterized protein | ||||
STRING | Bra039135.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3095 | 26 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01220.1 | 1e-168 | homeobox protein 20 |