PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC7141_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Dof

Protein Properties

Length: 368aa MW: 40666.7 Da PI: 8.4843

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC7141_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.9	9.1e-38	75	135	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg+++knk+ s RrC7141_p3 75 PHEKVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSKKNKRPS 135 67899*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-26	74	126	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.2E-32	77	133	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.425	79	133	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	81	117	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009409	Biological Process	response to cold
GO:0009416	Biological Process	response to light stimulus
GO:0009845	Biological Process	seed germination
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MDATKWTQGF QDMMHVKPME QIMIPNNNTH QSNATSDARP NTILTSNGVS AAGATVSGVS 60 NNNNTAVVVE RKARPHEKVN CPRCNSTNTK FCYYNNYSLT QPRYFCKGCR RYWTEGGSLR 120 NVPVGGSSKK NKRPSSSSSN ILQTTPSSLG LSTTLPDLNP PILFSNQIPN KSKESSQDLN 180 LLSFPVMQDQ HHHHHRGQMS QFLQMPKMEG NGNITHQQPS SLYGSSSSPV SALELLRTGA 240 NVSSRSGINS FMPSGPMLDS SNNMLYTSSG FPTMVDYKPS NLSFSTDHHQ RMGHNTSRSD 300 DHNDHHQGRI LFPFGDQMKE LTSSITQEVD HDDNQQQKSH GDNNNNSSSP NTGYWSGMFT 360 NTGEGSSW

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MDATKWTQGF QDMMHVKPME QIMIPNNNTH QSNATSDARP NTILTSNGVS AAGATVSGVS  60
NNNNTAVVVE RKARPHEKVN CPRCNSTNTK FCYYNNYSLT QPRYFCKGCR RYWTEGGSLR  120
NVPVGGSSKK NKRPSSSSSN ILQTTPSSLG LSTTLPDLNP PILFSNQIPN KSKESSQDLN  180
LLSFPVMQDQ HHHHHRGQMS QFLQMPKMEG NGNITHQQPS SLYGSSSSPV SALELLRTGA  240
NVSSRSGINS FMPSGPMLDS SNNMLYTSSG FPTMVDYKPS NLSFSTDHHQ RMGHNTSRSD  300
DHNDHHQGRI LFPFGDQMKE LTSSITQEVD HDDNQQQKSH GDNNNNSSSP NTGYWSGMFT  360
NTGEGSSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00319	DAP	Transfer from AT2G46590	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC232491	0.0	AC232491.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB049N04, complete sequence.
GenBank	AC241033	0.0	AC241033.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB045E05, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018472771.1	0.0	PREDICTED: dof zinc finger protein DOF2.5-like isoform X2
Swissprot	Q9ZPY0	0.0	DOF25_ARATH; Dof zinc finger protein DOF2.5
TrEMBL	A0A0D3B710	0.0	A0A0D3B710_BRAOL; Uncharacterized protein
STRING	Bo3g039340.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2528	26	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46590.2	0.0	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]