PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC6302_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Protein Properties

Length: 213aa MW: 23742.2 Da PI: 10.1576

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC6302_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	30.7	5.7e-10	96	195	1	82
EEEE-..-HHHHT.T-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvv 81 f+k+l dv s +rl++p + + ++ ++ ++ + +l d+ ++W v l+ + g+ y l GW++ vkangLk+gD++ RrC6302_p2 96 FEKTLFETDVKPSqSRLSIPFHKLIRNdfltpaesriieediSNREKMGLGAVLVDQGAKKWGVFLKRWEMNGSwnYALVCGWNDVVKANGLKDGDSIS 194 77888888887665788888888888888877777777766633344555688999999*****6644444448******************987 PP E CS B3 82 F 82 + RrC6302_p2 195 L 195 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03754	7.7E-47	74	183	IPR005508	B3 domain-containing protein
Gene3D	G3DSA:2.40.330.10	9.1E-21	87	210	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	9.61E-20	90	209	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.56E-13	95	206	No hit	No description
PROSITE profile	PS50863	12.012	116	212	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
ASTSSSSSHL IDLNKISSEK TKNPPNPSSL SSSSSCLTEN NTTSSRKRRA AQEGGKRGFK 60 KAKVSPLFTW EGKDTPDWML QLMRSTKGAQ DPMLIFEKTL FETDVKPSQS RLSIPFHKLI 120 RNDFLTPAES RIIEEDISNR EKMGLGAVLV DQGAKKWGVF LKRWEMNGSW NYALVCGWND 180 VVKANGLKDG DSISLWSFRC RGVLCFALVP LPI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013607726.1	1e-134	PREDICTED: B3 domain-containing protein At3g25182-like
Swissprot	Q9LRX6	4e-80	Y3485_ARATH; Putative B3 domain-containing protein At3g24850
TrEMBL	A0A3N6RWU8	1e-133	A0A3N6RWU8_BRACR; Uncharacterized protein
STRING	Bo9g044130.1	1e-134	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM273	10	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05930.1	1e-44	B3 family protein