PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC5869_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 352aa MW: 38831.1 Da PI: 5.9323

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC5869_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	46.8	5.4e-15	162	208	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ f++Lr++lP+ +K +Ka+ L ++++++k+L RrC5869_p2 162 KSHSEAERRRRERINNHFAKLRSILPST-----TKTDKASLLAEVIQHVKEL 208 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.876	159	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-12	162	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.63E-15	163	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-14	163	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-13	165	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.04E-5	172	211	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MCAKKQEEVE SSEAMNNIQN YQNDLFFHQL ISHHHHQDPS QAETSGAPDN NAGSGYTIFS 60 QDSVSPIWPT SAQPPFDQFP PPSFYGSFFN RSRAHHQGLQ FGYEGFGGAT SATHHHHEQL 120 RILSEALGPV VQVGSGPFGL QAELGKMTAQ EIMDAKALAA SKSHSEAERR RRERINNHFA 180 KLRSILPSTT KTDKASLLAE VIQHVKELKR ETSVISETNL VPTESNELTV AFTEEEDSGD 240 GRFVIKASVC CEDRSDLLPD MIKTLKAMRL KTIKAEITTV GERVRNVLFI AGEESSGEDG 300 TEEYSIGTIE AALKAVIEKS NVEESSSSAN AKGQRMSSHN TITIVEQQQH HM

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MCAKKQEEVE SSEAMNNIQN YQNDLFFHQL ISHHHHQDPS QAETSGAPDN NAGSGYTIFS  60
QDSVSPIWPT SAQPPFDQFP PPSFYGSFFN RSRAHHQGLQ FGYEGFGGAT SATHHHHEQL  120
RILSEALGPV VQVGSGPFGL QAELGKMTAQ EIMDAKALAA SKSHSEAERR RRERINNHFA  180
KLRSILPSTT KTDKASLLAE VIQHVKELKR ETSVISETNL VPTESNELTV AFTEEEDSGD  240
GRFVIKASVC CEDRSDLLPD MIKTLKAMRL KTIKAEITTV GERVRNVLFI AGEESSGEDG  300
TEEYSIGTIE AALKAVIEKS NVEESSSSAN AKGQRMSSHN TITIVEQQQH HM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	167	172	ERRRRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY072161	0.0	AY072161.1 Arabidopsis thaliana putative DNA-binding protein (At1g68810) mRNA, complete cds.
GenBank	AY122983	0.0	AY122983.1 Arabidopsis thaliana putative DNA-binding protein (At1g68810) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018468456.1	0.0	PREDICTED: transcription factor bHLH30-like
Swissprot	Q9S7Y1	0.0	BH030_ARATH; Transcription factor bHLH30
TrEMBL	V4JST7	0.0	V4JST7_EUTSA; Uncharacterized protein
STRING	XP_006391094.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7048	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	1e-179	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]