PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC5789_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | GRF | ||||||||
Protein Properties | Length: 279aa MW: 31507.6 Da PI: 8.2269 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 74.5 | 1.2e-23 | 80 | 123 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr++ +++k+CE+H+hrg++r +k+ + RrC5789_p1 80 DPEPGRCRRTDGKKWRCSREAHPDSKYCEKHMHRGKNRAKKTLD 123 79**************************************9876 PP | |||||||
2 | QLQ | 64.8 | 2.1e-22 | 15 | 50 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT++Q+q+L++Q+l+yKy+++++PvPpeL++ i++ RrC5789_p1 15 PFTPTQWQELEHQALIYKYMVSGVPVPPELIFSIRR 50 9*******************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 3.9E-14 | 14 | 50 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 8.2E-17 | 15 | 49 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.927 | 15 | 50 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 23.484 | 80 | 124 | IPR014977 | WRC domain |
Pfam | PF08879 | 7.7E-20 | 81 | 121 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MNQSGTNGRT TYRPPFTPTQ WQELEHQALI YKYMVSGVPV PPELIFSIRR SLDSSLVSRL 60 IPHQSIGWGS YQMGFGTKTD PEPGRCRRTD GKKWRCSREA HPDSKYCEKH MHRGKNRAKK 120 TLDQNQTTAP LTSPSLSFPN KDSPISPTLS SSSSSPFIDL YSRFGVGSSN SYPYPSSPKQ 180 QQTLQHASAL SLHQNTPTSH FNDLASETDQ KDFRTVLTNT SRQSDQNQEE EEKDSSETKK 240 SIHHFFGEDW AQNKNSSDCW LDLSSQSRLD TGNLQSDPC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Acts together with GIF1 for the development of appropriate leaf size and shape through the promotion and/or maintenance of cell proliferation activity in leaf primordia. {ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:15960617}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN180301 | 0.0 | JN180301.1 Brassica rapa subsp. pekinensis growth-regulating factor 5 (GRF5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018490328.1 | 1e-131 | PREDICTED: growth-regulating factor 5-like | ||||
Swissprot | Q8L8A6 | 3e-97 | GRF5_ARATH; Growth-regulating factor 5 | ||||
TrEMBL | A0A0D3BB73 | 1e-127 | A0A0D3BB73_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g065850.1 | 1e-128 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4567 | 26 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 1e-80 | growth-regulating factor 5 |