PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC566_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 150aa    MW: 16927.6 Da    PI: 8.208
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC566_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.86e-066081526
               --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
               lC++f  + +C++Gd+C++ H+
  RrC566_p2 60 LCNRFVSSNFCPFGDSCRYFHP 81
               8******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.05E-11442No hitNo description
PfamPF062207.9E-8537IPR013085Zinc finger, U1-C type
PROSITE profilePS5010312.5965583IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-65782IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-56080IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-46081IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MPSGKYYCDY CEKEFQDTQV ARKRHLQSNP HLRAKSLWYS SSTTSDVNNP QVSSFVPRGL  60
CNRFVSSNFC PFGDSCRYFH PNNVPGNTGY TNNNNTQSLA GLPNQHIQST SLNRDFFSGR  120
AEGTGWFDLP PSLRPPPEQG YPQLPSIDWG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013613001.15e-97PREDICTED: zinc finger CCCH domain-containing protein 3
TrEMBLA0A078G4X25e-95A0A078G4X2_BRANA; BnaA09g04110D protein
STRINGXP_006394904.17e-84(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104742225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.13e-74C3H family protein