PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5291_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family BBR-BPC
Protein Properties Length: 280aa    MW: 31290.5 Da    PI: 10.1081
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5291_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind57.85.3e-181112194
   GAGA_bind   1 mdddgsre..rnkg.yye.................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdn 79 
                 m++ g++   r k+ yy+                 ++++l   +++++ms++aerda+++ern a+++kk+a+a+rd+a+ qrd al+er++a++er+ 
  RrC5291_p2   1 MESGGQYGngRYKPdYYKgtppsvwnmmpqhqikeQHNALV--MNKKIMSILAERDAALKERNEAVAAKKEALAARDEALEQRDRALSERDNAIMERET 97 
                 77777776679999999999999999998877754446666..99****************************************************** PP

   GAGA_bind  80 kllalllvenslasa 94 
                 +l al    n+l ++
  RrC5291_p2  98 ALNALHSPYNNLDHH 112
                 **9999888877654 PP
2GAGA_bind253.71.1e-77136280155301
   GAGA_bind 155 rakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrga 253
                  ++++k  k+kk+ k++++ ++ v++++  ++ +++++  d++ln v++De+++PvPvC+CtG+ rqCYkWG+GGWqS+CCttt+S++PLP+++++r++
  RrC5291_p2 136 IPADKKPAKRKKESKQGKDLNRLVASPG--KKCRKDWDVNDVGLNLVAFDETSMPVPVCTCTGTARQCYKWGSGGWQSSCCTTTLSQHPLPQMPNKRHS 232
                 3455566666677777788888888888..57******************************************************************* PP

   GAGA_bind 254 RiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                 R++grKmS+++f++lL++La+eG+dls pvDLkd+WA+HGtn+++ti+
  RrC5291_p2 233 RMGGRKMSGNVFSRLLSRLAGEGHDLSSPVDLKDYWARHGTNRYITIK 280
                 ***********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012269.7E-1381280IPR010409GAGA-binding transcriptional activator
PfamPF062177.5E-8424280IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MESGGQYGNG RYKPDYYKGT PPSVWNMMPQ HQIKEQHNAL VMNKKIMSIL AERDAALKER  60
NEAVAAKKEA LAARDEALEQ RDRALSERDN AIMERETALN ALHSPYNNLD HHILSRAKRG  120
GNEGTHLPNP SPSSTIPADK KPAKRKKESK QGKDLNRLVA SPGKKCRKDW DVNDVGLNLV  180
AFDETSMPVP VCTCTGTARQ CYKWGSGGWQ SSCCTTTLSQ HPLPQMPNKR HSRMGGRKMS  240
GNVFSRLLSR LAGEGHDLSS PVDLKDYWAR HGTNRYITIK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018447695.10.0PREDICTED: protein BASIC PENTACYSTEINE5-like
RefseqXP_018447854.10.0PREDICTED: protein BASIC PENTACYSTEINE5-like
SwissprotF4JUI31e-158BPC5_ARATH; Protein BASIC PENTACYSTEINE5
TrEMBLA0A3P6C5P11e-177A0A3P6C5P1_BRACM; Uncharacterized protein
STRINGXP_006411681.11e-175(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40902659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38910.21e-146basic pentacysteine 5