PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC49_p8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bHLH | ||||||||
Protein Properties | Length: 549aa MW: 62576.1 Da PI: 5.1971 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.3 | 1.1e-12 | 311 | 354 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +ErrRR+++N+++ Lr+l+P +Kl+ a+iL A++Y+k+Lq RrC49_p8 311 HAERRRRKKLNDRLYALRSLVPRI-----TKLDRASILGDAINYVKELQ 354 68*********************7.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 2.3E-19 | 10 | 151 | IPR025610 | Transcription factor MYC/MYB N-terminal |
CDD | cd00083 | 2.94E-14 | 303 | 356 | No hit | No description |
PROSITE profile | PS50888 | 16.247 | 304 | 353 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.36E-17 | 306 | 369 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.7E-16 | 310 | 359 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.0E-10 | 311 | 354 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-16 | 312 | 367 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048657 | Biological Process | anther wall tapetum cell differentiation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 549 aa Download sequence Send to blast |
MENNMQILLE KLRPLVGARA WDYCVLWRLN EDQRFLKWMG CCCGGTLLLI EENETEEFSF 60 RGCRDVMFHH LRTKSCEFLA HLPSSIPLDS GIYAETLLTN QTGWLTESSE PGFMQETICT 120 RVLVPIPGGL VELFATRHVA EDQNVVDFVM NMLMDGTVTI NMMVADEVES KPYGMLPGEI 180 HQKGSSKDEE MIMNLQSPYD ISADQIRLNF LPQMNDYESQ QHLKMKSGYD HHQDLGPYLA 240 ENGNNMNPFN TVGEEGVGEP SLLVKEQQVA NDKEMNHENA TGSECSDQID DEDDPKCKKK 300 TGKHTQAKNL HAERRRRKKL NDRLYALRSL VPRITKLDRA SILGDAINYV KELQNEAKEL 360 QDELEENSET EDGSNRQQVG MSLNGTVVTG FHPGLLCNSN VPGLKQDPQV DVAQLDGREF 420 FVKVICEYKP GGFTRLMEAL DSLGLEVTNA NTTRFLSLVS NVFKVEKTDS EMVPAEHVRN 480 SLLEITRNTS RGWHDDQMAT ASMQNEKNEV DYQHYDDHHH HGGHHQLHDH QMNQSAHHHH 540 QHINHYQNQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-12 | 302 | 366 | 2 | 73 | Transcription factor MYC2 |
5gnj_B | 2e-12 | 302 | 366 | 2 | 73 | Transcription factor MYC2 |
5gnj_E | 2e-12 | 302 | 366 | 2 | 73 | Transcription factor MYC2 |
5gnj_F | 2e-12 | 302 | 366 | 2 | 73 | Transcription factor MYC2 |
5gnj_G | 2e-12 | 302 | 366 | 2 | 73 | Transcription factor MYC2 |
5gnj_I | 2e-12 | 302 | 366 | 2 | 73 | Transcription factor MYC2 |
5gnj_M | 2e-12 | 302 | 366 | 2 | 73 | Transcription factor MYC2 |
5gnj_N | 2e-12 | 302 | 366 | 2 | 73 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 297 | 318 | KKKTGKHTQAKNLHAERRRRKK |
2 | 312 | 319 | ERRRRKKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a crucial role in tapetum development. Required for male fertility and pollen differentiation, especially during the post-meiotic transcriptional regulation of microspore development within the developing anther (PubMed:12535353). Binds E-box regions in the AHL16/TEK promoter. {ECO:0000269|PubMed:12535353, ECO:0000269|PubMed:24804694}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ511991 | 0.0 | AJ511991.1 Brassica napus mRNA for bHLH transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018492422.1 | 0.0 | PREDICTED: transcription factor ABORTED MICROSPORES-like | ||||
Refseq | XP_018492423.1 | 0.0 | PREDICTED: transcription factor ABORTED MICROSPORES-like | ||||
Refseq | XP_018492424.1 | 0.0 | PREDICTED: transcription factor ABORTED MICROSPORES-like | ||||
Refseq | XP_018492425.1 | 0.0 | PREDICTED: transcription factor ABORTED MICROSPORES-like | ||||
Swissprot | Q9ZVX2 | 0.0 | AMS_ARATH; Transcription factor ABORTED MICROSPORES | ||||
TrEMBL | Q84WX1 | 0.0 | Q84WX1_BRANA; BHLH transcription factor | ||||
STRING | Bra002004.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7589 | 27 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16910.1 | 0.0 | bHLH family protein |