PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4936_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 435aa    MW: 48473.8 Da    PI: 5.5181
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4936_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.41.2e-31234288155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 kpr+rWtpeLHe+F++ v++L G+ekAtPk++l+lm+v+gLt++hvkSHLQkYRl
  RrC4936_p1 234 KPRMRWTPELHESFLKSVNKLEGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRL 288
                 79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.015231291IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-29232289IPR009057Homeodomain-like
SuperFamilySSF466897.88E-17233288IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-23234289IPR006447Myb domain, plants
PfamPF002492.1E-8236287IPR001005SANT/Myb domain
PfamPF143795.5E-22324370IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MNRHRLVSTA QDECNKGIQK AFSSSHLSPA YNFLNVQPET MKSPFIRSQS PDWPKNNTSQ  60
GTFSRSSTFC TNLYSSSSST SESQKHLGNS LPFLPNPSAS GVESARSPSI FSEEDLSNPF  120
DGDNNSGLLV KDFLTLSGDA CSNGGGFHDL DCSNDSYCLS DQMELQFLSD ELELAITDRA  180
ETPRLDEIYE TPLASSSNLV TGKSPSQCDA GAMSIDAVSS HPSPKSSASA ANHKPRMRWT  240
PELHESFLKS VNKLEGPEKA TPKAVLKLMN VEGLTIYHVK SHLQKYRLAK YMPERKEEKK  300
NVNSEEKKLA LSNSEADEKK RGAIQLTEAL RMQMEVQKQL HEQLEVQRVL QLRIEEHAKY  360
LEKMLEEQRK AGRLFSPSDD SKPDSQNLSQ TEVSLPQPPP SSAKNIASET EDDQCESPQK  420
RRKLEDNTEP LDSER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-25234291259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-25234291259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-25234291259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-25234291259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-25234291259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-25234291259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-25234291259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-25234291259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00354DAPTransfer from AT3G13040Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018441996.10.0PREDICTED: myb family transcription factor PHL6-like
RefseqXP_018441997.10.0PREDICTED: myb family transcription factor PHL6-like
SwissprotQ949U20.0PHL6_ARATH; Myb family transcription factor PHL6
TrEMBLA0A078HXW50.0A0A078HXW5_BRANA; BnaA01g30110D protein
STRINGBra039364.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67862744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.20.0G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]