PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC4676_p4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | DBB | ||||||||
Protein Properties | Length: 180aa MW: 19702.1 Da PI: 5.2954 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.6 | 2.2e-07 | 4 | 33 | 5 | 34 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ ++ fC ++ lC++C ++ H RrC4676_p4 4 LCDACENAAAIVFCAADEAALCRSCDEKVH 33 6*******9******************998 PP | |||||||
2 | zf-B_box | 26.7 | 1.1e-08 | 52 | 91 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 ++++C+ +e+ ++ ++Ce +++ lC +C + H g H RrC4676_p4 52 NAPCCDICENAPAFFYCEIDGSSLCLQCDMVVHVGgkrtH 91 789***************************9996555556 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.395 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.38E-6 | 3 | 45 | No hit | No description |
Pfam | PF00643 | 5.8E-6 | 4 | 42 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.7E-7 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.916 | 51 | 96 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.2E-12 | 51 | 96 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.7E-6 | 52 | 91 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 9.07E-8 | 56 | 96 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MRILCDACEN AAAIVFCAAD EAALCRSCDE KVHMCNKLAS RHVRVGLAEP SNAPCCDICE 60 NAPAFFYCEI DGSSLCLQCD MVVHVGGKRT HGRFLLLRQR IEFPGDKPKP NNTRDNLQNQ 120 RVSANANGEA NGKTDDEMID LNANPLRVNE PSSNDQGIDV NNTNNHEPAG VGPFKRESEK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352890 | 1e-175 | AK352890.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-08-L04. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018449394.1 | 1e-128 | PREDICTED: B-box zinc finger protein 19 isoform X1 | ||||
Refseq | XP_018450575.1 | 1e-128 | PREDICTED: B-box zinc finger protein 19 isoform X1 | ||||
Swissprot | C0SVM5 | 1e-121 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | M4D2L5 | 1e-123 | M4D2L5_BRARP; Uncharacterized protein | ||||
STRING | Bra010718.1-P | 1e-124 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2168 | 24 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38960.1 | 1e-123 | DBB family protein |