PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC4474_p4

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 263aa MW: 29655.7 Da PI: 9.075

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC4474_p4	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	114.5	1.1e-35	42	194	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...........lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra...... 77 lp+G++F+Ptd+elv e+L++kv+gk+ + + +i+ +i++++P++Lp v+++ + +fF+k +++y+tg+rk+r+ RrC4474_p4 42 LPAGVKFDPTDQELV-EHLEAKVKGKEennkwfpshplI---DefipAIDGEdGICYTHPQKLP-GVTKDGLSKHFFHKPSRAYTTGTRKRRKiiqtdh 135 799**********.99*****776666654332...144434666645******.555666799**************8899999 PP NAM 78 .......tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++ +W++tgk+++v+ +g++ g+kk+Lv+y g+++++ekt+Wvmh+y+l RrC4474_p4 136 dsqltgsPSETRWHKTGKTRPVMI-NGRQRGCKKILVLYtnFGKNRRPEKTNWVMHQYHL 194 999977644788********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.06E-38	34	213	IPR003441	NAC domain
PROSITE profile	PS51005	31.029	42	213	IPR003441	NAC domain
Pfam	PF02365	3.4E-16	43	194	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MKNTCNLIDS KLEEHHYLCG SKHCPGCGRM IQAATKPNWF GLPAGVKFDP TDQELVEHLE 60 AKVKGKEENN KWFPSHPLID EFIPAIDGED GICYTHPQKL PGVTKDGLSK HFFHKPSRAY 120 TTGTRKRRKI IQTDHDSQLT GSPSETRWHK TGKTRPVMIN GRQRGCKKIL VLYTNFGKNR 180 RPEKTNWVMH QYHLGINEEE REGELVVSKI FYQTQPRQCV GNINWSEHKV SSKDLIGIGA 240 GDEICGVAAA LQSLGSGDVV SRQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018456809.1	0.0	PREDICTED: NAC domain-containing protein 73 isoform X1
Refseq	XP_018456810.1	0.0	PREDICTED: NAC domain-containing protein 73 isoform X1
Refseq	XP_018456811.1	0.0	PREDICTED: NAC domain-containing protein 73 isoform X2
Swissprot	Q9M0F8	1e-115	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A078JBJ9	0.0	A0A078JBJ9_BRANA; BnaAnng19940D protein
TrEMBL	A0A397XJQ5	0.0	A0A397XJQ5_BRACM; Uncharacterized protein
TrEMBL	A0A397XNG6	0.0	A0A397XNG6_BRACM; Uncharacterized protein
TrEMBL	M4CF20	0.0	M4CF20_BRARP; Uncharacterized protein
STRING	Bra002802.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14928	17	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56620.1	1e-179	NAC domain containing protein 99

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]