PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4222_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 204aa    MW: 22642.4 Da    PI: 7.9786
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4222_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.7e-12138183655
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +++Er RR ri  ++ +L+el+P+     +k  s a++L +Ave+Ik Lq
  RrC4222_p3 138 SIAERERRTRISGKLKKLQELVPNM----DKQTSYADMLDLAVEHIKGLQ 183
                 689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.056132182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-14135196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.90E-10136187No hitNo description
Gene3DG3DSA:4.10.280.109.4E-13137194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-12138188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-9138183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MEEGTGFPLG KPNGKYGGGV ERVPSRLKSE LRFSGGDSSS HQEYNSEVEA PSAAINGVAS  60
TSMSFGNNLN NWDNSSSQIS FTIDEPGKRS KTTDFFTLET QFSMPQTSLE MESLINIPED  120
SVPWKVRAKR GCATHPRSIA ERERRTRISG KLKKLQELVP NMDKQTSYAD MLDLAVEHIK  180
GLQHHIESLE KGMERCTCGA CKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013681187.11e-138transcription factor bHLH129
SwissprotQ9ZW812e-91BH129_ARATH; Transcription factor bHLH129
TrEMBLA0A078HWE31e-137A0A078HWE3_BRANA; BnaC03g24060D protein
STRINGBra000291.1-P1e-137(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103291833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43140.21e-107bHLH family protein