PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC4076_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 184aa MW: 21788.2 Da PI: 4.4079 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 99.5 | 4.9e-31 | 8 | 129 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.... 95 lppGfrF+P de+lv eyL+kkv ++++++ ++e++ ++v+PwdL +++e+y+F+k++ ++ +k r t sgyW++ + +ev+++ RrC4076_p2 8 LPPGFRFDPDDEDLVFEYLAKKVLHRPMDF--DLPELRSCNVDPWDLL---GDKNTEVYYFVKKEDRE----KKGRETLSGYWEEFEE-EEVMESgdrg 96 79*************************999..49*************6...45778*******99876....6789999*****9876.6666665766 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++l g kkt++fy g++p+g+ t W+m e+rl RrC4076_p2 97 CNHLEGRKKTFAFYIGKRPRGTITPWIMYEFRL 129 6677***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.27E-32 | 5 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.596 | 8 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-18 | 9 | 129 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MNGRSMRLPP GFRFDPDDED LVFEYLAKKV LHRPMDFDLP ELRSCNVDPW DLLGDKNTEV 60 YYFVKKEDRE KKGRETLSGY WEEFEEEEVM ESGDRGCNHL EGRKKTFAFY IGKRPRGTIT 120 PWIMYEFRLL SSRATRWSSS SLPWGEVENW RAVKVIVKEE NEEEIEEDEQ ASDESDGEEV 180 VQSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-18 | 6 | 164 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-18 | 6 | 164 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-18 | 6 | 164 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-18 | 6 | 164 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-18 | 6 | 164 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-18 | 6 | 164 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF974765 | 0.0 | KF974765.1 Brassica napus NAC transcription factor 97-1 (NAC97-1.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018455122.1 | 1e-132 | PREDICTED: NAC domain-containing protein 41-like | ||||
TrEMBL | A0A0D3E9S1 | 1e-109 | A0A0D3E9S1_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6E816 | 1e-109 | A0A3P6E816_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g097190.1 | 1e-110 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14666 | 18 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50820.1 | 3e-84 | NAC domain containing protein 97 |