PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC3535_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 404aa MW: 44421.9 Da PI: 9.5171 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.6 | 1.1e-05 | 84 | 106 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H RrC3535_p1 84 FVCEICNKGFQRDQNLQLHRRGH 106 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.8 | 0.00035 | 161 | 183 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +++ RrC3535_p1 161 WKCEKCSKFYAVQSDWKAHTKVC 183 58*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.3E-5 | 83 | 106 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.67E-6 | 83 | 106 | No hit | No description |
Pfam | PF12171 | 6.2E-5 | 84 | 106 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.949 | 84 | 106 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 84 | 106 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 86 | 106 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.67E-6 | 156 | 181 | No hit | No description |
SMART | SM00355 | 180 | 161 | 181 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MDMFSSRNWS NRPRSLSAEA SVSSGNAVSA IQDFYGLDNV TSSGLCTHTE TQKAKKRRGV 60 PGNPDPDAEV VALSPKTLLA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLKQKNTKEQ 120 QKKKVYVCPD TNCVHHHPSR ALGDLTGIKK HFCRKHGEKK WKCEKCSKFY AVQSDWKAHT 180 KVCGTREYRC DCGTLFSRKD SFITHRAFCD ALAEESARII STPSSNFTNP SPSFQDRPFL 240 LNKSPSSSLL FTSPPPYVNP APQPTTAAAL SATALLQKAT ALSSGPFGGG GQTRSVGHHR 300 PLTTVNELLG AGQVMMRPSS SSEYDQLVAD GLTSTWQKAD RLTRDFLGLT GHGAHVSVRP 360 GDMLEYAGGV SFPLSTYLTE SHNHESSSSF QQAYDLGFSG PHNM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 9e-36 | 157 | 226 | 3 | 72 | Zinc finger protein JACKDAW |
5b3h_F | 9e-36 | 157 | 226 | 3 | 72 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493672 | 0.0 | AB493672.1 Arabidopsis thaliana At4g02670 mRNA for hypothetical protein, partial cds, clone: RAAt4g02670. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018469337.1 | 0.0 | PREDICTED: protein indeterminate-domain 12 | ||||
Swissprot | O22759 | 0.0 | IDD12_ARATH; Protein indeterminate-domain 12 | ||||
TrEMBL | A0A0D3ASE2 | 0.0 | A0A0D3ASE2_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6DPP5 | 0.0 | A0A3P6DPP5_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g100660.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM155 | 28 | 306 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02670.1 | 0.0 | indeterminate(ID)-domain 12 |
Publications ? help Back to Top | |||
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