PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3106_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 330aa    MW: 37425.2 Da    PI: 8.6249
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3106_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.66.6e-36351272103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++++sw ++ ++f+v+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fk+g+k+ll++i+
    RrC3106_p1  35 FLTKTYQLVDDPATDHVVSWGDDDTTFIVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKRGEKHLLCEIH 122
                   9*****************************************************************99.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
    RrC3106_p1 123 RRKTS 127
                   **987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.4E-3827119IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-6031124IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.25E-3432124IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.4E-203558IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.8E-3235124IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.4E-207385IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407498IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.4E-208698IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MATMVENSYG YGGVGTGERI QLMVEGQGKA VPAPFLTKTY QLVDDPATDH VVSWGDDDTT  60
FIVWRPPEFA RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KRGEKHLLCE  120
IHRRKTSQMM IPNQHSPFIT PPQIPFSGGG ASFFPLSPRV VDAAMDDHYW CESPPPRPRA  180
VHTTAVDAQV AVLTEENERL RRSNTVLMSE LAHMKKLYND IIYFVQNHVK PVAPSNSFLQ  240
KQQQPPPPLS INYYNNATVL NHSPPTSQSS VTVLEDDTNQ ESNTRKTKLF GVSLPSSKKR  300
SHHFSDQSSQ TRLVLDKSDL GLNLMTASTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-223112717123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1297301KKRSH
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018445529.10.0PREDICTED: heat stress transcription factor B-4-like
SwissprotQ9C6350.0HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A0D3CNU50.0A0A0D3CNU5_BRAOL; Uncharacterized protein
STRINGBo6g008100.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29002866
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.10.0heat shock transcription factor B4