PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC282_p3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | B3 | ||||||||
Protein Properties | Length: 762aa MW: 86424.8 Da PI: 9.6768 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.4 | 5.4e-18 | 23 | 99 | 12 | 95 |
HTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 12 ksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 +++ l +p kf++eh +g k+e+kt+tl++ ++W+vk+ ++++ lt GWkeFv+a+ L +gDfvvF++++++ f +v+ RrC282_p3 23 SKSHLNIPVKFFSEHiEG-KHEGKTVTLRSdALEETWKVKM--EGQR----LTHGWKEFVEAHVLGVGDFVVFRHERDMLF--HVT 99 45569**********644.56789*****96778*******..8887....***********************9988877..665 PP | |||||||
2 | B3 | 46.1 | 8.8e-15 | 141 | 240 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 f+k + +s ++++gr lp +f++ +g++k++ +++l d++g +W ++l++ + ++++ ++ ++GW+ F+ n++++g++++++l++ ++++++k+ RrC282_p3 141 FVKLTPTSTSFETGRQHLPASFTRVNGLIKPG--KIILVDKKGAEWVMELKVlKINGSMymfIMSRNGWRIFCGVNEVRAGESLTLELIR-GGASPMLKF 237 7889999**********************777..7***************9875555553455556**********************98.88999**99 PP E-S CS B3 97 frk 99 ++k RrC282_p3 238 CSK 240 986 PP | |||||||
3 | B3 | 40.4 | 5.4e-13 | 359 | 432 | 13 | 90 |
TT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 13 sgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 +++ +p +f+ +h +g+ +++k ++l++ s r+Wev+l ++++ +++GWk+F++ + ++ D++ F++dg++ f RrC282_p3 359 NSNPLIPDSFVLNHlKGNVQSTKLMKLTSdASDRTWEVEL--DGQR----FARGWKHFCDHHCIRNDDVLSFRHDGDMVF 432 455789*********666677888999886888*******..8888....9***********************998877 PP | |||||||
4 | B3 | 60.5 | 2.8e-19 | 434 | 514 | 17 | 99 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +lp kfa+++g+++++ ++ l++e+g+sW++ l+++k+ g+ + ++GW +F+k ng+k+ f+ Fkl++ +++++v++++ + RrC282_p3 434 YLPSKFARSNGLNNRQ-CEIDLRNEHGKSWTLDLRHNKTTGQSFVRNGWTNFCKLNGIKAESFCRFKLVQ-NGRKPVLQLCPN 514 79********999766.5**************************************************99.788899999875 PP | |||||||
5 | B3 | 38.7 | 1.8e-12 | 542 | 631 | 7 | 99 |
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SSSEE..EEEEE-S CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldgrsefelvvkvfrk 99 +++++ksgrl++p +f +++g+k+++ ++t+ +++g +W++ l k+s+ ++++ G ++ ang+k +gD+++++ ++ ++++ +k+ +k RrC282_p3 542 KPYMFKSGRLRVPAPFGRANGIKEAG--KITIVNKDGVEWKLHLGNMKGSELFYIR-GLRDCFAANGIKkVGDSFTLEAIR-GGANPILKISSK 631 789*****************999877..79999***********555555557777.***********99********987.888899999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.6E-22 | 8 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.32E-20 | 10 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.971 | 12 | 104 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.56E-17 | 13 | 99 | No hit | No description |
SMART | SM01019 | 8.6E-22 | 15 | 104 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.6E-13 | 23 | 96 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.16E-16 | 137 | 244 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.0E-14 | 141 | 240 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.393 | 141 | 241 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.50E-15 | 141 | 239 | No hit | No description |
SMART | SM01019 | 3.1E-19 | 141 | 241 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-13 | 141 | 240 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.0E-13 | 343 | 433 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.71E-11 | 347 | 434 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 6.005 | 347 | 417 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.9E-7 | 350 | 432 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.5E-8 | 359 | 432 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.01E-7 | 364 | 433 | No hit | No description |
PROSITE profile | PS50863 | 12.449 | 418 | 514 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.0E-17 | 433 | 515 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.10E-16 | 434 | 513 | No hit | No description |
Pfam | PF02362 | 4.6E-18 | 434 | 514 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.1E-17 | 434 | 514 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.04E-17 | 434 | 514 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.2E-7 | 534 | 628 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.98 | 536 | 632 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.4E-14 | 536 | 632 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.89E-7 | 540 | 628 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 9.2E-12 | 541 | 631 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.39E-8 | 541 | 628 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 762 aa Download sequence Send to blast |
MVKKASLFSP ATPHFFQPFL LGSKSHLNIP VKFFSEHIEG KHEGKTVTLR SDALEETWKV 60 KMEGQRLTHG WKEFVEAHVL GVGDFVVFRH ERDMLFHVTA LGSDCCEIQY TPSGSRRQED 120 EEESVEIERS AKEVEKNLTK FVKLTPTSTS FETGRQHLPA SFTRVNGLIK PGKIILVDKK 180 GAEWVMELKV LKINGSMYMF IMSRNGWRIF CGVNEVRAGE SLTLELIRGG ASPMLKFCSK 240 MEQPPFEAEA RAYKRAKWSQ EIREKTAEQG EPSHRTRVSK ETNAYQENLQ DKQPCSVSDL 300 LMTKVKDSVV STLTSIRRFR EELKTKEQEL EDSLQEIKNL VMASSTKKPI FIIDLSGQNS 360 NPLIPDSFVL NHLKGNVQST KLMKLTSDAS DRTWEVELDG QRFARGWKHF CDHHCIRNDD 420 VLSFRHDGDM VFHYLPSKFA RSNGLNNRQC EIDLRNEHGK SWTLDLRHNK TTGQSFVRNG 480 WTNFCKLNGI KAESFCRFKL VQNGRKPVLQ LCPNTEVGEI ESEDCSDPAS MNQKRTVALQ 540 LKPYMFKSGR LRVPAPFGRA NGIKEAGKIT IVNKDGVEWK LHLGNMKGSE LFYIRGLRDC 600 FAANGIKKVG DSFTLEAIRG GANPILKISS KEASFDGYKT PQRRMIQVSR AEEEKETRVQ 660 KKARVSAEGG PSSQRTRASN RSSAGPKSLQ GKQPLQPCSI SDQVTKVKQS VVDALTDVRQ 720 FRSELEIKER NLEAALLEID VLEEKIMGIS KLFNINQVES MR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018461106.1 | 0.0 | PREDICTED: putative B3 domain-containing protein REM4 | ||||
Swissprot | Q9SB79 | 1e-115 | REM4_ARATH; Putative B3 domain-containing protein REM4 | ||||
TrEMBL | M4E5D7 | 0.0 | M4E5D7_BRARP; Uncharacterized protein | ||||
STRING | Bra023991.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9658 | 15 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31630.1 | 1e-117 | B3 family protein |
Publications ? help Back to Top | |||
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