PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC282_p3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 762aa    MW: 86424.8 Da    PI: 9.6768
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC282_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.45.4e-1823991295
               HTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
         B3 12 ksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
               +++ l +p kf++eh +g k+e+kt+tl++    ++W+vk+  ++++    lt GWkeFv+a+ L +gDfvvF++++++ f  +v+
  RrC282_p3 23 SKSHLNIPVKFFSEHiEG-KHEGKTVTLRSdALEETWKVKM--EGQR----LTHGWKEFVEAHVLGVGDFVVFRHERDMLF--HVT 99
               45569**********644.56789*****96778*******..8887....***********************9988877..665 PP

2B346.18.8e-15141240199
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                f+k + +s ++++gr  lp +f++ +g++k++  +++l d++g +W ++l++ + ++++   ++ ++GW+ F+  n++++g++++++l++  ++++++k+
  RrC282_p3 141 FVKLTPTSTSFETGRQHLPASFTRVNGLIKPG--KIILVDKKGAEWVMELKVlKINGSMymfIMSRNGWRIFCGVNEVRAGESLTLELIR-GGASPMLKF 237
                7889999**********************777..7***************9875555553455556**********************98.88999**99 PP

                E-S CS
         B3  97 frk 99 
                ++k
  RrC282_p3 238 CSK 240
                986 PP

3B340.45.4e-133594321390
                TT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
         B3  13 sgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                +++  +p +f+ +h +g+ +++k ++l++  s r+Wev+l  ++++    +++GWk+F++ + ++  D++ F++dg++ f
  RrC282_p3 359 NSNPLIPDSFVLNHlKGNVQSTKLMKLTSdASDRTWEVEL--DGQR----FARGWKHFCDHHCIRNDDVLSFRHDGDMVF 432
                455789*********666677888999886888*******..8888....9***********************998877 PP

4B360.52.8e-194345141799
                E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                +lp kfa+++g+++++  ++ l++e+g+sW++ l+++k+ g+ + ++GW +F+k ng+k+  f+ Fkl++ +++++v++++ +
  RrC282_p3 434 YLPSKFARSNGLNNRQ-CEIDLRNEHGKSWTLDLRHNKTTGQSFVRNGWTNFCKLNGIKAESFCRFKLVQ-NGRKPVLQLCPN 514
                79********999766.5**************************************************99.788899999875 PP

5B338.71.8e-12542631799
                .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldgrsefelvvkvfrk 99 
                +++++ksgrl++p +f +++g+k+++  ++t+ +++g +W++ l   k+s+ ++++ G ++   ang+k +gD+++++ ++  ++++ +k+ +k
  RrC282_p3 542 KPYMFKSGRLRVPAPFGRANGIKEAG--KITIVNKDGVEWKLHLGNMKGSELFYIR-GLRDCFAANGIKkVGDSFTLEAIR-GGANPILKISSK 631
                789*****************999877..79999***********555555557777.***********99********987.888899999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.6E-228106IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-2010110IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.97112104IPR003340B3 DNA binding domain
CDDcd100174.56E-171399No hitNo description
SMARTSM010198.6E-2215104IPR003340B3 DNA binding domain
PfamPF023625.6E-132396IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-16137244IPR015300DNA-binding pseudobarrel domain
PfamPF023622.0E-14141240IPR003340B3 DNA binding domain
PROSITE profilePS5086312.393141241IPR003340B3 DNA binding domain
CDDcd100172.50E-15141239No hitNo description
SMARTSM010193.1E-19141241IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-13141240IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.0E-13343433IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-11347434IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.005347417IPR003340B3 DNA binding domain
SMARTSM010194.9E-7350432IPR003340B3 DNA binding domain
PfamPF023623.5E-8359432IPR003340B3 DNA binding domain
CDDcd100172.01E-7364433No hitNo description
PROSITE profilePS5086312.449418514IPR003340B3 DNA binding domain
SMARTSM010195.0E-17433515IPR003340B3 DNA binding domain
CDDcd100172.10E-16434513No hitNo description
PfamPF023624.6E-18434514IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-17434514IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.04E-17434514IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.2E-7534628IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.98536632IPR003340B3 DNA binding domain
SMARTSM010194.4E-14536632IPR003340B3 DNA binding domain
SuperFamilySSF1019365.89E-7540628IPR015300DNA-binding pseudobarrel domain
PfamPF023629.2E-12541631IPR003340B3 DNA binding domain
CDDcd100172.39E-8541628No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 762 aa     Download sequence    Send to blast
MVKKASLFSP ATPHFFQPFL LGSKSHLNIP VKFFSEHIEG KHEGKTVTLR SDALEETWKV  60
KMEGQRLTHG WKEFVEAHVL GVGDFVVFRH ERDMLFHVTA LGSDCCEIQY TPSGSRRQED  120
EEESVEIERS AKEVEKNLTK FVKLTPTSTS FETGRQHLPA SFTRVNGLIK PGKIILVDKK  180
GAEWVMELKV LKINGSMYMF IMSRNGWRIF CGVNEVRAGE SLTLELIRGG ASPMLKFCSK  240
MEQPPFEAEA RAYKRAKWSQ EIREKTAEQG EPSHRTRVSK ETNAYQENLQ DKQPCSVSDL  300
LMTKVKDSVV STLTSIRRFR EELKTKEQEL EDSLQEIKNL VMASSTKKPI FIIDLSGQNS  360
NPLIPDSFVL NHLKGNVQST KLMKLTSDAS DRTWEVELDG QRFARGWKHF CDHHCIRNDD  420
VLSFRHDGDM VFHYLPSKFA RSNGLNNRQC EIDLRNEHGK SWTLDLRHNK TTGQSFVRNG  480
WTNFCKLNGI KAESFCRFKL VQNGRKPVLQ LCPNTEVGEI ESEDCSDPAS MNQKRTVALQ  540
LKPYMFKSGR LRVPAPFGRA NGIKEAGKIT IVNKDGVEWK LHLGNMKGSE LFYIRGLRDC  600
FAANGIKKVG DSFTLEAIRG GANPILKISS KEASFDGYKT PQRRMIQVSR AEEEKETRVQ  660
KKARVSAEGG PSSQRTRASN RSSAGPKSLQ GKQPLQPCSI SDQVTKVKQS VVDALTDVRQ  720
FRSELEIKER NLEAALLEID VLEEKIMGIS KLFNINQVES MR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018461106.10.0PREDICTED: putative B3 domain-containing protein REM4
SwissprotQ9SB791e-115REM4_ARATH; Putative B3 domain-containing protein REM4
TrEMBLM4E5D70.0M4E5D7_BRARP; Uncharacterized protein
STRINGBra023991.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96581537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31630.11e-117B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]