PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC2729_p8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 429aa MW: 47153.6 Da PI: 4.7718 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 155 | 3.4e-48 | 6 | 134 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 l+pGfrFhPtd elv +yLk+kv gkkl + ++i+e+diyk+eP+dLp k +k+++ +w+fF++r+kkyatg r+nrat+ gyWk+tgk+++vl+ +g RrC2729_p8 6 LAPGFRFHPTDVELVRYYLKRKVLGKKLLV-DAIAELDIYKFEPSDLPdKsYIKSGDLKWHFFCPREKKYATGVRANRATECGYWKTTGKERTVLC-NG 102 579************************999.89**************96347778888**************************************.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrle 129 ++vg ktLv++ g++p+ge+tdWvmheyrle RrC2729_p8 103 TVVGKIKTLVYHVGKSPRGERTDWVMHEYRLE 134 9*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.06E-58 | 3 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.887 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.1E-26 | 8 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 429 aa Download sequence Send to blast |
MGKTELAPGF RFHPTDVELV RYYLKRKVLG KKLLVDAIAE LDIYKFEPSD LPDKSYIKSG 60 DLKWHFFCPR EKKYATGVRA NRATECGYWK TTGKERTVLC NGTVVGKIKT LVYHVGKSPR 120 GERTDWVMHE YRLEDNVLTQ KNIPQDTYVL CVLFKKDGPG PRNGAQYGAP FKEEDWSDEE 180 HRTGVPATNN GAIFLGGHNA ETSLAVGPSH DSNKACFGGM ISESCVSDFP PATATATATT 240 SVTAAHLTDA ANTPVSAPLL DPNSSASMAQ TLQAPNDDDD IYAMLDLFVE EDDYLRFCQT 300 NNNEARHEAN VSAPISLGEE VIFDDLPYFS SMHNNSIPRT PSYDLIENSE LYLELQDLTT 360 PLAPPHIWNV SDSYLSAPLA PPQVGNVSDS YLTAPFAPPQ VGNGSDPFLS HQGHFDFSAA 420 ANADAYGFP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-43 | 6 | 156 | 15 | 168 | Stress-induced transcription factor NAC1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC966758 | 0.0 | KC966758.1 Brassica napus NAC transcription factor 82 (NAC82.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018445455.1 | 0.0 | PREDICTED: NAC domain-containing protein 82 | ||||
Refseq | XP_018445456.1 | 0.0 | PREDICTED: NAC domain-containing protein 82 | ||||
Swissprot | Q9FY82 | 0.0 | NAC82_ARATH; NAC domain-containing protein 82 | ||||
TrEMBL | A0A3P6E4B0 | 0.0 | A0A3P6E4B0_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g174090.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3692 | 25 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09330.4 | 1e-169 | NAC domain containing protein 82 |
Publications ? help Back to Top | |||
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