PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC2685_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bZIP | ||||||||
Protein Properties | Length: 274aa MW: 30643.8 Da PI: 6.2833 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33.5 | 8.9e-11 | 183 | 226 | 5 | 48 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 kr +r NR +A+rsR RK+++i eLe+ v +L++e + L + RrC2685_p1 183 KRVKRILANRQSAQRSRVRKLQYISELERSVTTLQSEVSVLSPR 226 8999********************************98777655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.7E-13 | 179 | 243 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.634 | 181 | 233 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.5E-9 | 183 | 226 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.77E-11 | 183 | 237 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 3.5E-13 | 183 | 234 | No hit | No description |
CDD | cd14703 | 4.88E-26 | 184 | 234 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 186 | 201 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MAQLPPKIPN MTPPHWPDFS SQKLSHFSTA AASSAVQNPS WVDEFLDFSA CRRGNHRRSI 60 SDSIAFLEAP IVTSHMEEHN FDKFDDEQFM SMFTDDDDDL RNHPSHNNKN VGPSGSSLNT 120 STPRADHKSF NDDREPPSHH NMNGNNNNCN DEVTGQCKTE PEDGTASSNN SGDSSGNRII 180 DPKRVKRILA NRQSAQRSRV RKLQYISELE RSVTTLQSEV SVLSPRVAFL DHQRLLLNVD 240 NSALKQRIAA LAQDKIFKDG CFGSIDIPLQ MGLE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in the sporophytic control of cell wall patterning and gametophytic control of pollen development. May play a role in the control of metabolic pathways regulating cellular transport and lipid metabolism. {ECO:0000269|PubMed:17719007, ECO:0000269|PubMed:19449183}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC241104 | 0.0 | AC241104.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH017L09, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018475040.1 | 1e-170 | PREDICTED: basic leucine zipper 34-like | ||||
Swissprot | F4IN23 | 1e-123 | BZP34_ARATH; Basic leucine zipper 34 | ||||
TrEMBL | A0A3N6R2D1 | 1e-160 | A0A3N6R2D1_BRACR; Uncharacterized protein | ||||
STRING | Bra000256.1-P | 1e-157 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1753 | 27 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42380.2 | 1e-117 | bZIP family protein |
Publications ? help Back to Top | |||
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