PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2615_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family AP2
Protein Properties Length: 553aa    MW: 60903.7 Da    PI: 5.5165
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2615_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.37.7e-13290335755
         AP2   7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 r++++ grW A+I  +     +k  +lg+fgt eeAa+a++ a+ k++g
  RrC2615_p3 290 RRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 335
                 899*********988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.154205266IPR001471AP2/ERF domain
SMARTSM003802.2E-4212272IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-9229267IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.5E-8232267IPR001471AP2/ERF domain
PROSITE profilePS5103216.687284343IPR001471AP2/ERF domain
CDDcd000181.38E-20290345No hitNo description
PfamPF008476.7E-8290335IPR001471AP2/ERF domain
SMARTSM003801.2E-25290349IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-14291345IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.7E-15291344IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MNSMNNNWLG FSLSPYDQNT HRTCVDSSTD TTAVDVAGEY CYDMTAASDE SSAVRTSFPS  60
PFGVVLDALT RDNNSHSRDW DINGGACNNI HSNDQNEPKL ENFFGRTTTI YNTSENGGDG  120
NGGCGGGDDS RGSLGLSMIR TWLMNQPVSN MDHQDNNGTG ARGLLLSMNS STTCDSNTYN  180
NGNVALQEKT IVDSADATPK KATESIGGQE DTRHIYGIIV AKEKAKLARE DKFIWVRGYD  240
KEEKAARAYD LAALKYWGTT TTTNFPMNEY EKEVEEMNHM TRQEYVASLR RHHQHGRWQA  300
RIGRVAGNKD LYLGTFGTQE EAAEAYDIAA IKFRGLSAVT NFEMSRYNVK AILESLSLPI  360
GSAAKRLKEV NHSVPSMMID NNVSESENNT SSWQNAAHQH HHGIDLSLLQ QHQERYNNYH  420
DGGNLSPESA SACFKQEEKQ HHFLSNSQSL MANIDHRSSD WDDSVTVCGK VVAYGGYQGL  480
AVPVGTSVNC DAMAAAEIAY DARNHYYFAQ QLHQQQGDFP GAVSNNVGSN MYFHGEGGGE  540
GAPTTLRKIV KDL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3179050.0AF317905.1 Brassica napus AP2/EREBP transcription factor BABY BOOM2 (BBM2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018467647.10.0PREDICTED: AP2-like ethylene-responsive transcription factor BBM2
SwissprotQ8LSN20.0BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLM4E4B40.0M4E4B4_BRARP; Uncharacterized protein
STRINGBra023617.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86552737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.10.0AP2 family protein