PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC257_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bZIP | ||||||||
Protein Properties | Length: 275aa MW: 30615.9 Da PI: 10.8513 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 39.7 | 1e-12 | 205 | 259 | 7 | 58 |
HHCHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 7 errkqkNReAArrsRqRKka...eieeLeekvkeLeaeNkaLkkeleelkkevak 58 +r++kNRe+A rsR+RK++ ++ eLe kv++L+aeN +Lk + ++lk +a+ RrC257_p2 205 HKRMIKNRESAARSRARKQEcaaYTNELELKVAQLKAENARLKRQQDQLKMAAAN 259 69****************954449*************************987765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.7E-5 | 199 | 266 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 3.4E-11 | 203 | 255 | No hit | No description |
CDD | cd14707 | 9.07E-23 | 203 | 260 | No hit | No description |
Pfam | PF00170 | 1.7E-10 | 203 | 256 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.47E-8 | 204 | 254 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 206 | 221 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000028 | Biological Process | regulation of photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MFSSAKHQRN HRVSAPNKNK TLNKVSPISS SSSPLHSQDS QSLKRSLVTM EEVWNDISLA 60 SIHHVNRHSQ HQQHSHEPRF SSPNHQNQNP NSIFQDFLNR PLNQEPAIPT SLTMGSSSNG 120 HSTTVTALFS SSPLAPPATV LSLNSGPRFE FLDNQDPLVT PNSNLHSYNH LTNVASLDTP 180 FEALVTSTCN KRSHESNGGS GNRHHKRMIK NRESAARSRA RKQECAAYTN ELELKVAQLK 240 AENARLKRQQ DQLKMAAANQ QPKKNTLQRS STAPF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:16099979, ECO:0000269|PubMed:16099980}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018449453.1 | 0.0 | PREDICTED: protein FD-like | ||||
Swissprot | Q84JK2 | 1e-130 | FD_ARATH; Protein FD | ||||
TrEMBL | V4LSE7 | 1e-146 | V4LSE7_EUTSA; Uncharacterized protein | ||||
STRING | XP_006412047.1 | 1e-147 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1934 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35900.1 | 1e-121 | bZIP family protein |