PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2546_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 696aa    MW: 78257.5 Da    PI: 6.2118
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2546_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.46e-192779456
                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 ++++++q++ Le++Fe++++p++++r++L ++l+L+ +qVk+WFqN+R++ k
  RrC2546_p2 27 YHRHSPQQIQKLEAYFEECPHPNESQRQKLCNELNLEIDQVKFWFQNKRTQSK 79
                67899*********************************************988 PP
2START1066.4e-342184339206
                 HHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT...... CS
       START   9 elvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg...... 88 
                 e++k+   ++++Wv ss   +  + +e++ kf++s         ++e +++++vv+ +++ l e +ld+  +W+  ++     a+t+ ++ s       
  RrC2546_p2 218 EELKQLFTDDALWVMSSidgTYMIDQESYEKFSQSIKhlrnlsARVESSKDVTVVPIEATCLIEMFLDTD-KWKMLFPtivnNATTIRTLGSElstken 315
                 6778888899*******999777888888888877778899*9***************************.99999988888***************** PP

                 .EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX..HHHHHH CS
       START  89 .galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp..hwllrs 183
                  ++lq+++ +l  lsplvp R+f++vR+++q ++g w+i+dvS +  ++   s+s+ +   +pSg+li+ +sn +++vtw+ehv+++   p  h ++r 
  RrC2546_p2 316 cNVLQVISEQLHILSPLVPpREFMIVRCCQQISDGLWIIADVSHNIVNSDRVSPSCYK---RPSGCLIRALSNAKTQVTWIEHVEVDHT-PdtHRMYRE 410
                 *****************************************99988777776777776...************************9865.559****** PP

                 HHHHHHHHHHHHHHHHTXXXXXX CS
       START 184 lvksglaegaktwvatlqrqcek 206
                 l + +   ga++w  tl+r ce+
  RrC2546_p2 411 LASGSSGYGARRWIVTLERMCER 433
                 *********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-18679IPR009057Homeodomain-like
SuperFamilySSF466891.63E-17981IPR009057Homeodomain-like
PROSITE profilePS5007116.3092181IPR001356Homeobox domain
SMARTSM003893.8E-152385IPR001356Homeobox domain
CDDcd000863.27E-162481No hitNo description
PfamPF000461.9E-162779IPR001356Homeobox domain
SuperFamilySSF559612.2E-23204434No hitNo description
CDDcd088753.14E-78207432No hitNo description
SMARTSM002341.7E-19210433IPR002913START domain
Gene3DG3DSA:3.30.530.203.1E-6214397IPR023393START-like domain
PfamPF018524.3E-28217433IPR002913START domain
PROSITE profilePS5084832.297218436IPR002913START domain
SuperFamilySSF559612.33E-7455656No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MDYDGDGSPD NEQYTSMNPM SKEKKIYHRH SPQQIQKLEA YFEECPHPNE SQRQKLCNEL  60
NLEIDQVKFW FQNKRTQSKA QDERNSNICL RAENERIRCE NAAMKEALKN VTCPPCGGPL  120
FGSDEREHNV HKLRSEKVLL KAECDNMKAA VNNYQQIMLD SLTSVQRQQT FETLTSYGMN  180
PYNPFNQPSS SESHTIQPQL LSQMDIPQLS ETAAIAVEEL KQLFTDDALW VMSSIDGTYM  240
IDQESYEKFS QSIKHLRNLS ARVESSKDVT VVPIEATCLI EMFLDTDKWK MLFPTIVNNA  300
TTIRTLGSEL STKENCNVLQ VISEQLHILS PLVPPREFMI VRCCQQISDG LWIIADVSHN  360
IVNSDRVSPS CYKRPSGCLI RALSNAKTQV TWIEHVEVDH TPDTHRMYRE LASGSSGYGA  420
RRWIVTLERM CERMALSSIP VMPPTDWSET IPTVEGRKSV MKIGERMLKI FNEMLIMSGK  480
VEFPQQSKCG VRISIRMNME AGQPPGLVAS AASCLSISRT PLQVFNCLRS NSIRHKWDAL  540
CHENVITETA HIATGSSETN YINLLQHTLA GDIGKSMEQE PDKKMMLLQE CYMDALGGMI  600
VYAPLDMALM SIAASGKVDP LKIPILPSGF TISSDNSGGS MASENGGTIL TLAFQILITD  660
KNSKIKNVTE NSVDSVSRLI SKTVQRIKSL FNCPPE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489833.10.0PREDICTED: homeobox-leucine zipper protein HDG8
SwissprotQ9M9P40.0HDG8_ARATH; Homeobox-leucine zipper protein HDG8
TrEMBLA0A078HX260.0A0A078HX26_BRANA; BnaC02g09070D protein
STRINGBo2g018400.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM127911530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03260.10.0homeodomain GLABROUS 8