PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC25023_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bHLH | ||||||||
Protein Properties | Length: 195aa MW: 21927.1 Da PI: 8.6446 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.3 | 2.8e-08 | 71 | 115 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ r RR+ri ++ +eL +l+P +Kl+ ae+ + A +Y+k Lq RrC25023_p1 71 SIAARERRRRIADKTQELTKLIPGG-----QKLNTAEMFQAAAKYVKFLQ 115 577899*****************86.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.23E-11 | 63 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.309 | 65 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-10 | 68 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.9E-6 | 71 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.4E-8 | 71 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.47E-4 | 86 | 118 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MDSFLPTSKR QRLCNSSYHC NTHNHFPNPN LAFVPEASIF PEFRVPDFPL AFEVGRGDQE 60 GTKKPTLSSQ SIAARERRRR IADKTQELTK LIPGGQKLNT AEMFQAAAKY VKFLQSQVGI 120 LQMMQTTKKT QGISNAEIEA QVLLGSQAIQ EKLSTEEVCL VPCEMVRDLT SEESIWKNPK 180 ISREITKLLS TDLAN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018482308.1 | 1e-123 | PREDICTED: transcription factor bHLH53-like isoform X1 | ||||
Swissprot | Q84RD0 | 9e-91 | BH053_ARATH; Transcription factor bHLH53 | ||||
TrEMBL | A0A078I0N0 | 1e-118 | A0A078I0N0_BRANA; BnaA04g20390D protein | ||||
STRING | Bra021933.1-P | 1e-118 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4547 | 25 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34820.1 | 4e-92 | bHLH family protein |
Publications ? help Back to Top | |||
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