PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RrC23935_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 115aa MW: 13322.8 Da PI: 7.2952 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 28.6 | 3.1e-09 | 88 | 114 | 5 | 31 |
CHHHCHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeL 31 +++rr+ +NRe+ArrsR RK+ ++eL RrC23935_p1 88 RKQRRMLSNRESARRSRMRKQRHLDEL 114 79*********************9998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50217 | 8.657 | 86 | 115 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.5E-6 | 88 | 114 | No hit | No description |
Pfam | PF00170 | 1.3E-6 | 88 | 114 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 7.99E-7 | 88 | 114 | No hit | No description |
CDD | cd14702 | 3.18E-12 | 89 | 114 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 91 | 106 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 115 aa Download sequence Send to blast |
MIPAGITAYC QYLSPENLAT LPAEFNMINM PSSPTSSSSL TYLNDLINNN FSSSSNGQDL 60 MMSNNSTSDE DHQHHHHHHQ SIIILDERKQ RRMLSNRESA RRSRMRKQRH LDELW |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 100 | 107 | RRSRMRKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB493545 | 2e-38 | AB493545.1 Arabidopsis thaliana At2g04038 gene for hypothetical protein, partial cds, clone: RAAt2g04038. | |||
GenBank | AC007178 | 2e-38 | AC007178.6 Arabidopsis thaliana chromosome 2 clone F3L12 map mi320, complete sequence. | |||
GenBank | CP002685 | 2e-38 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013613647.1 | 1e-65 | PREDICTED: basic leucine zipper 43 | ||||
TrEMBL | A0A0D3AVT9 | 3e-64 | A0A0D3AVT9_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g138370.1 | 5e-65 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2892 | 24 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G04038.1 | 2e-31 | basic leucine-zipper 48 |