PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC2290_p4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | LBD | ||||||||
Protein Properties | Length: 179aa MW: 19391 Da PI: 7.0967 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.4 | 5.9e-39 | 11 | 110 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+l+r+C++ C++ap+f ++++ +fa vhk+FGasnv+kll+++pee+r+++++sl+yeA++r++dPvyG++g i +lq+++ +l++++a++++ RrC2290_p4 11 SCAACKLLKRRCTPTCIFAPHFRSTDQMTFAKVHKVFGASNVSKLLSEVPEEQRQETVNSLAYEADVRLKDPVYGCIGAIASLQKKMLELQHDIAVARS 109 6*********************************************************************************************99987 PP DUF260 100 e 100 + RrC2290_p4 110 R 110 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.528 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.9E-38 | 11 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MRGHEPRSSS SCAACKLLKR RCTPTCIFAP HFRSTDQMTF AKVHKVFGAS NVSKLLSEVP 60 EEQRQETVNS LAYEADVRLK DPVYGCIGAI ASLQKKMLEL QHDIAVARSR LLSAHNNAGG 120 GGVNNNNNSN HVSSSPLVDD SSPQLAAFLD LVPSYSDLML LDGSGLDAYL FDIGQPPFV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-40 | 6 | 121 | 6 | 121 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-40 | 6 | 121 | 6 | 121 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC254608 | 1e-126 | AC254608.1 Capsella rubella clone CAP16-D12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018488521.1 | 1e-109 | PREDICTED: LOB domain-containing protein 21 | ||||
Swissprot | Q9SRL8 | 6e-97 | LBD21_ARATH; LOB domain-containing protein 21 | ||||
TrEMBL | A0A078F5A9 | 1e-102 | A0A078F5A9_BRANA; BnaA05g27870D protein | ||||
TrEMBL | A0A397ZEE1 | 1e-102 | A0A397ZEE1_BRACM; Uncharacterized protein | ||||
STRING | Bra034867.1-P | 1e-102 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10255 | 27 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11090.1 | 6e-82 | LOB domain-containing protein 21 |
Publications ? help Back to Top | |||
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