PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC22724_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 318aa    MW: 34991.8 Da    PI: 10.2488
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC22724_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.48.3e-16119166355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  ++hn  E+rRR++iN+++ +L+el+P +      K +K+++L  A+eY+ksLq
  RrC22724_p1 119 EMHNLSEKRRREKINERMKTLQELIPRC-----NKTDKSSMLDDAIEYVKSLQ 166
                  58*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.58E-20114176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.05116165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-13119166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.44E-17119170No hitNo description
Gene3DG3DSA:4.10.280.103.5E-21120174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-16122171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
PPPASFIYTP TAAARPICQF TTWRRAGNFT NFSRLRVEGA ARPWVTGGGV AQTFAVPRAV  60
SGIAGLVVSE TGTEPVQIQP AAAATEGERK RKEREETAAG DTEEAAGGST SRKRSRAAEM  120
HNLSEKRRRE KINERMKTLQ ELIPRCNKTD KSSMLDDAIE YVKSLQMQIQ MMSAGGGMML  180
PMMYTPTNMQ QFMPPSAMGM NRPPFIPFPG TASPRPPAHL AGLCPPYPAP RYPFPSRVQQ  240
PDPVQNQPQF PGYFNPYSQF VGLQQMQQPP PPPLQNQTTS QQSISQASSS KAPEDQDNKP  300
TGWLKRITSP SISTELKM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111128RKRSRAAEMHNLSEKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5775865e-51AJ577586.1 Arabidopsis thaliana mRNA for putative bHLH127 transcription factor (bHLH127 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018467782.11e-131PREDICTED: transcription factor bHLH119-like
SwissprotQ9SVU79e-81BH056_ARATH; Putative transcription factor bHLH056
TrEMBLA0A398ARK71e-106A0A398ARK7_BRACM; Uncharacterized protein (Fragment)
STRINGBo1g017090.11e-104(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM90411635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28790.12e-48bHLH family protein