PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC201_p6
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 282aa    MW: 32046.8 Da    PI: 4.9076
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC201_p6genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM58.13e-1879241128
        NAM  41 kvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                 + P++ ++k+k++++ew+fF++ +k++++g   +rat++gyW++ g +ke+++    +g++vg  k Lvf++++    + t+Wv+hey+l
  RrC201_p6   7 PSAPETQQSKMKTKDREWFFFTTLEKHEKNG-YMERATTKGYWSERGIEKEIKRGggdDGQVVGKVKRLVFHTNN----QPTNWVIHEYHL 92 
                5567777779999***********9988776.67889999*************988888889**********543....457*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100519.4161112IPR003441NAC domain
SuperFamilySSF1019415.36E-171298IPR003441NAC domain
PfamPF023652.6E-112092IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MADRILPSAP ETQQSKMKTK DREWFFFTTL EKHEKNGYME RATTKGYWSE RGIEKEIKRG  60
GGDDGQVVGK VKRLVFHTNN QPTNWVIHEY HLVDYDNDGH GLEILLSFIY LLSDTSGNIN  120
APFSEQEWDD VSGEALVPSL VHANGINEKI QQESDSGSKN LFDLNELPGE FQMDNDLKTV  180
DNDACLLPCV LNKEAHLPFI QYKRKRHIVS FGSYHDNSRQ TTYQDHCSSP KTTSEAIPCV  240
AAAMLEESEP EPVDTAMVPT TSSYTELIKN LQKEKKQMTV EL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013616777.11e-102PREDICTED: NAC domain-containing protein 53-like
TrEMBLA0A3P6D2J01e-101A0A3P6D2J0_BRAOL; Uncharacterized protein
STRINGBo2g010310.11e-102(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1873667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.15e-36NAC domain containing protein 50