PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC18618_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 301aa MW: 33816.9 Da PI: 8.2834 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.2 | 1.3e-52 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrF Ptdeel+v+yL++kv+g +++l ++i ++d+yk++PwdLp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk ++s +g+ RrC18618_p1 14 LPPGFRFYPTDEELLVQYLCRKVAGYHFSL-QIIGDIDLYKFDPWDLPSKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVITS-DGH 109 79***************************9.89***************8777899**************************************9.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 vg+kk Lvfy g+apkg+kt+W+mheyrl RrC18618_p1 110 RVGIKKALVFYAGKAPKGTKTNWIMHEYRL 139 ****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-66 | 9 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.845 | 14 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.3E-26 | 15 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MGVREKDPLA QLSLPPGFRF YPTDEELLVQ YLCRKVAGYH FSLQIIGDID LYKFDPWDLP 60 SKALFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKVITSDGHR VGIKKALVFY 120 AGKAPKGTKT NWIMHEYRLI EHSRSSHGSS KLDDWVLCRI YYKKMSGSQQ RQAVVAPVQA 180 CLEDQSTNGS PSSSSSQLDD VLDSFPEMKD VSFNLPRLNS LRTILNGNFD WASLASLNHV 240 PELAPTTNGL SNYGSYHAFR AAEGELESGC SNVQQNSSEL TQSFGYSSSR FGLSGQIYEF 300 R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-104 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-104 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-104 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-104 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-104 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-104 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-104 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-104 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factors that bind specifically to the 5'-CATGTG-3' motif. {ECO:0000269|PubMed:15319476}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly induced by drought, high salinity and abscisic acid (ABA). Slightly up-regulated by cold treatment. Not induced by jasmonic acid. {ECO:0000269|PubMed:15319476, ECO:0000269|Ref.7}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC966756 | 0.0 | KC966756.1 Brassica napus NAC transcription factor 72 (NAC72.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018447063.1 | 0.0 | PREDICTED: NAC domain-containing protein 72-like | ||||
Swissprot | Q93VY3 | 0.0 | NAC72_ARATH; NAC domain-containing protein 72 | ||||
TrEMBL | A0A078DPW4 | 0.0 | A0A078DPW4_BRANA; NAC transcription factor 72 | ||||
TrEMBL | A0A398ATJ7 | 0.0 | A0A398ATJ7_BRACM; Uncharacterized protein | ||||
TrEMBL | M4EC44 | 0.0 | M4EC44_BRARP; Uncharacterized protein | ||||
STRING | Bra026353.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1435 | 27 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.2 | 1e-172 | NAC family protein |
Publications ? help Back to Top | |||
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