PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC18359_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 345aa    MW: 37660.8 Da    PI: 7.0851
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC18359_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.21.5e-12210268563
                  CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                  kr +r   NR++A rs +RK ++++eLe kv++L++e ++L  +l +l+  +  l++++
  RrC18359_p1 210 KRVKRILANRVSAARSKERKTQYMAELEHKVQTLQTEATTLSAQLTHLQRDSMGLTNQN 268
                  899*********************************************99888777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.5E-19206270IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.898208271IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.5E-13210265No hitNo description
SuperFamilySSF579593.87E-12210266No hitNo description
PfamPF001702.4E-10210267IPR004827Basic-leucine zipper domain
CDDcd147031.47E-21211260No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0010628Biological Processpositive regulation of gene expression
GO:0010629Biological Processnegative regulation of gene expression
GO:0090567Biological Processreproductive shoot system development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
IIGDGPENLP PRKSHRRSNS DVTFGFISSS LKSPPLIPSS RSLERSVSGG EGGGASDWSN  60
LVKEEPGRRS ESEAMDDIFK AYMNLDNIDV LNSFGGEEME SSGTRKTASS DSEGESSAAC  120
GNNVSSGVKR RAGGDIAPPT SRHYRSVSMD SGFMGKLDFG GGGDDNKLPL TSSGEGNSSF  180
EFGNGEFTAA EMKKISADEK LAEIVMSDPK RVKRILANRV SAARSKERKT QYMAELEHKV  240
QTLQTEATTL SAQLTHLQRD SMGLTNQNSE LKFRLQAMEQ QAQLRDALSE KLNEEVQRLK  300
LVIGETSGRN SRRESNISKT TLSPEMFQQL SISQQQMQHS KAQIK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222230ARSKERKTQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00037PBMTransfer from AT2G21230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4012981e-128AF401298.1 Arabidopsis thaliana transcription factor bZIP30 (BZIP30) mRNA, complete cds.
GenBankAY0544971e-128AY054497.1 Arabidopsis thaliana putative bZIP transcription factor (At2g21230; F7O24.5) mRNA, complete cds.
GenBankAY0932681e-128AY093268.1 Arabidopsis thaliana putative bZIP transcription factor (At2g21230) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018477278.10.0PREDICTED: probable transcription factor PosF21
TrEMBLA0A397ZKC60.0A0A397ZKC6_BRACM; Uncharacterized protein
STRINGBra030314.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156251417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21230.11e-122bZIP family protein